Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

18149533 .. 18151793

Gene Structure 2261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTTTACGATGGATACGCTTATCATGGAACTACCTTTGAGCAGACTTACCGGTGTTATCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCGTAATGCTTCAACAGATAGTTTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAGAAGGCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCAAGAAGGAGACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGCATTGAGGAACTATTCATGTCTAACGGTCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTTCATAGACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAACTGATTGCGAGGTTGATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGCACCTGCTCCAGCCAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACCAAAGTTTAACCCTTTCACGGGTTCGGGAAGACGTTTGGATGGACGACCTTTATCCTATGAACCGCAACCTGGTGCTGCTAACAGTAACGGCCAATCACATCCTGTTGCAAGTAGTAGTAGTAGTGGGTCAGAGAAGGCTACGCAACAAAATCGAGGGAAACTTGTGTTCGGTTCAAATGTAGAGCGGTCTACTAAAGAGACAACAAAGGTTGGAGCTGGGAAAGATAGAAAGCAAGAGGAAGAGGCTGAGAAGGAAGCCAAGTTCCAAGCTTTTAGTGGTAAAAAATATTCATTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

311

Amino Acids

34.58

Weight (kDa)

5.45

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	1.5e-40	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	2.1e-36	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AarI	CACCTGC	1 cut(s)	595
Acc36I	ACCTGC	1 cut(s)	595
AccBSI	CCGCTC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	821
AciI	CCGC	4 cut(s)	210, 402, 695, 817
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	5 cut(s)	408, 503, 649, 650, 701
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	5 cut(s)	92, 173, 189, 521, 807
AjnI	CCWGG	1 cut(s)	700
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AloI	GAACNNNNNNTCC	2 cut(s)	878, 910
AluBI	AGCT	5 cut(s)	140, 377, 602, 848, 902
AluI	AGCT	5 cut(s)	140, 377, 602, 848, 902
Alw26I	GTCTC	3 cut(s)	285, 392, 824
AoxI	GGCC	1 cut(s)	721
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	110, 310
AvaII	GGWCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	4 cut(s)	5, 127, 398, 665
BceAI	ACGGC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BciT130I	CCWGG	1 cut(s)	702
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	3 cut(s)	285, 392, 824
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	3 cut(s)	331, 450, 567
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	2 cut(s)	255, 522
BpiI	GAAGAC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	408, 503, 649, 650, 701
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	702
BseGI	GGATG	4 cut(s)	65, 267, 676, 730
BseLI	CCNNNNNNNGG	5 cut(s)	408, 503, 649, 650, 701
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	694
BseYI	CCCAGC	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	723
BshTI	ACCGGT	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	5 cut(s)	408, 503, 649, 650, 701
BsmAI	GTCTC	3 cut(s)	285, 392, 824
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	723
Bso31I	GGTCTC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	210, 402, 695, 817
BspANI	GGCC	1 cut(s)	723
BspCNI	CTCAG	1 cut(s)	871
BspLI	GGNNCC	3 cut(s)	331, 450, 567
BspMI	ACCTGC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	51
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	430, 716
Bst6I	CTCTTC	2 cut(s)	324, 867
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	603, 879
BstF5I	GGATG	4 cut(s)	65, 267, 676, 730
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	3 cut(s)	285, 392, 824
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	694
BstV2I	GAAGAC	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	65, 267, 676, 730
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	448
CsiI	ACCWGGT	1 cut(s)	700
CspAI	ACCGGT	1 cut(s)	51
CviAII	CATG	3 cut(s)	26, 295, 420
DdeI	CTNAG	2 cut(s)	603, 879
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	721
Eam1104I	CTCTTC	2 cut(s)	324, 867
EarI	CTCTTC	2 cut(s)	324, 867
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	700
FaeI	CATG	3 cut(s)	29, 298, 423
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	25, 294, 419
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	4 cut(s)	52, 274, 683, 717
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	708
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	723
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	3 cut(s)	29, 298, 423
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	110, 310
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	2 cut(s)	434, 763
Hpy188III	TCNNGA	2 cut(s)	368, 657
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	5 cut(s)	230, 281, 507, 760, 877
HpyCH4III	ACNGT	2 cut(s)	430, 716
HpyCH4IV	ACGT	2 cut(s)	336, 664
HpyCH4V	TGCA	5 cut(s)	148, 268, 283, 346, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	603, 879
HpySE526I	ACGT	2 cut(s)	336, 664
Hsp92II	CATG	3 cut(s)	29, 298, 423
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	595, 845
LpnPI	CCDG	9 cut(s)	65, 244, 591, 600, 606, 687, 714, 747, 834
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	2 cut(s)	255, 522
MabI	ACCWGGT	1 cut(s)	700
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	336, 664
MaeIII	GTNAC	3 cut(s)	98, 313, 716
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	817
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	245, 311, 672, 884
MluCI	AATT	2 cut(s)	87, 271
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	412, 823
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	1 cut(s)	639
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	29, 298, 423
NlaIV	GGNNCC	3 cut(s)	331, 450, 567
NmuCI	GTSAC	2 cut(s)	98, 313
PaqCI	CACCTGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	470
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	337
PsiI	TTATAA	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	3 cut(s)	331, 450, 567
PspPI	GGNCC	1 cut(s)	448
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	702
SexAI	ACCWGGT	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	255, 522
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	87, 271
SsiI	CCGC	4 cut(s)	210, 402, 695, 817
SspI	AATATT	1 cut(s)	920
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	700
TaaI	ACNGT	2 cut(s)	430, 716
TaiI	ACGT	2 cut(s)	339, 667
TaqI	TCGA	2 cut(s)	369, 784
TasI	AATT	2 cut(s)	87, 271
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	98, 313
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	2 cut(s)	98, 313
TspDTI	ATGAA	5 cut(s)	214, 408, 463, 705, 912
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.