Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Forward (+)

9466389 .. 9467948

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTCGGTGTCACCATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTCGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCTACTATTGGAATTGACTTCTTATCGAAAACAATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTATGGGATACAGCTGGACAAGAAAGATTCAGGAGTTTAATACCAAGTTACATAAGAGATTCTTCTGTTGCAGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACACATCCAAGTGGATAGAAGAAGTCCGTAATGAAAGAGCCGGCGATGTTATCATTGTTCTTGTCGGTAACAAGACTGATCTTGTCGAAAAACGGCAAGTTTCTATTGAGGAAGGAGATAGCAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAGCCTTTGTTTCGCAAAATCGCTGCGGCATTACCGGGAATGGAATCGTATTCAAACACTAAAAATGAGGATATGGTTGATGTAAACCTGAAACCAACTTCGAATTCATCCCAAGGTGATCAACAAGGAGGAGCTTGTTCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

23.11

Weight (kDa)

6.38

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 130	3.5e-14	ADP-ribosylation factor family
Ras	PF00071	11 - 169	3.4e-56	Ras family
Roc	PF08477	11 - 125	6.9e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	3.5e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	458
AciI	CCGC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	161, 472, 531
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
AluBI	AGCT	3 cut(s)	184, 197, 611
AluI	AGCT	3 cut(s)	184, 197, 611
Alw26I	GTCTC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	181, 500
ApoI	RAATTY	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	6, 605
AsuII	TTCGAA	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	193, 487
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	182, 501, 504
BlsI	GCNGC	3 cut(s)	183, 502, 505
Bme1390I	CCNGG	2 cut(s)	116, 513
BmrFI	CCNGG	2 cut(s)	116, 513
BmsI	GCATC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	589
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	299, 584
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	2 cut(s)	193, 487
Bsh1236I	CGCG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	336, 512
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	578
Bsp143I	GATC	4 cut(s)	49, 163, 373, 595
BspACI	CCGC	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	458
BspMAI	CTGCAG	1 cut(s)	183
BspT104I	TTCGAA	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	4 cut(s)	49, 163, 373, 595
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	299, 584
BstFNI	CGCG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	52, 166, 376, 598
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	49, 163, 373, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 511
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	193, 487
BsuI	GTATCC	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	299, 584
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	88, 618
CviJI	RGCY	7 cut(s)	119, 184, 197, 275, 335, 481, 611
CviKI_1	RGCY	7 cut(s)	119, 184, 197, 275, 335, 481, 611
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	4 cut(s)	51, 165, 375, 597
DpnII	GATC	4 cut(s)	49, 163, 373, 595
Eco130I	CCWWGG	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	2 cut(s)	91, 621
FaiI	YATR	9 cut(s)	30, 89, 93, 187, 236, 267, 440, 551, 619
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FatI	CATG	2 cut(s)	87, 617
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	182, 501, 504
FokI	GGATG	2 cut(s)	286, 571
Fsp4HI	GCNGC	3 cut(s)	182, 501, 504
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	3 cut(s)	182, 501, 504
HapII	CCGG	2 cut(s)	336, 512
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	91, 621
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	5 cut(s)	210, 242, 282, 468, 521
HpaII	CCGG	2 cut(s)	336, 512
HphI	GGTGA	2 cut(s)	6, 605
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188III	TCNNGA	2 cut(s)	214, 425
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	181, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	91, 621
HspAI	GCGC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	49, 163, 373, 595
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	2 cut(s)	193, 487
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	12, 230, 362
MalI	GATC	4 cut(s)	51, 165, 375, 597
MboI	GATC	4 cut(s)	49, 163, 373, 595
MboII	GAAGA	3 cut(s)	173, 237, 326
MluCI	AATT	2 cut(s)	129, 580
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	397, 538, 599
MroNI	GCCGGC	1 cut(s)	335
MseI	TTAA	3 cut(s)	221, 477, 622
MslI	CAYNNNNRTG	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	336, 512
MspR9I	CCNGG	2 cut(s)	116, 513
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	69
NaeI	GCCGGC	1 cut(s)	337
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	49, 163, 373, 595
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	91, 621
NmuCI	GTSAC	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	210, 242, 468, 521
PkrI	GCNGC	3 cut(s)	183, 502, 505
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstI	CTGCAG	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	304
SaqAI	TTAA	3 cut(s)	221, 477, 622
SatI	GCNGC	3 cut(s)	182, 501, 504
Sau3AI	GATC	4 cut(s)	49, 163, 373, 595
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	116, 513
SetI	ASST	8 cut(s)	113, 159, 186, 199, 424, 567, 595, 613
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	129, 580
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	114, 511
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	5 cut(s)	102, 143, 166, 381, 578
TasI	AATT	2 cut(s)	129, 580
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	210, 242, 468, 521
Tru1I	TTAA	3 cut(s)	221, 477, 622
Tru9I	TTAA	3 cut(s)	221, 477, 622
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	2 cut(s)	181, 500
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	5 cut(s)	76, 342, 433, 573, 606
TspGWI	ACGGA	2 cut(s)	311, 447
XapI	RAATTY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.