Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Forward (+)

10844250 .. 10846708

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1030600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGACGGTGTCCCCTCTGGCCAAATACAAGCTCGTCTTCCTCGGCGATCAGTCCGTCGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACTTATCAGGCTACGATTGGAATCGATTTTCTGTCAAAAACGATGTACCTTGAAGATCGGACAGTTCGTTTGCAGCTCTGGGATACTGCAGGGCAAGAAAGATTCAGGAGTCTGATTCCAAGCTACATCAGGGATTCTTCTGTTGCAGTAATCGTCTATGATGTAGCCAATAGACAGTCATTTCTTAACACTAATAAGTGGGTTGAGGAAGTACGGACAGAACGGGGAACTGATGTCATCATCGTGCTTGTGGGGAACAAGACTGATCTCGTCGATAAAAGGCAAGTCTCGATAGAGGAAGGAGATTCAAAATCTCGCGAGTTTGGAGTCATGTTCATTGAAACTAGTGCAAAAGCAGGATTTAACATCAAGCCTCTGTTCCGTAAAATTGCTGCTGCTTTGCCAGGGATGGAAACCCTTTCTTCCACAAAACAGGAAGACATGGTCGATGTAAACCTGAAACCGACTGTTAACTCGTCCCATACAGAGCAGCAAGGAGGAGGTTGCGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

6.62

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 130	1.8e-14	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.5e-57	Ras family
Roc	PF08477	11 - 125	1.7e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	3.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	616
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	3 cut(s)	92, 155, 321
AgsI	TTSAA	3 cut(s)	161, 417, 449
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	34, 184, 231
AluI	AGCT	3 cut(s)	34, 184, 231
Alw26I	GTCTC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	4 cut(s)	181, 500, 503, 598
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	31, 552
BbvI	GCAGC	4 cut(s)	193, 487, 490, 610
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 622
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	182, 501, 504, 599
BlsI	GCNGC	4 cut(s)	183, 502, 505, 600
Bme1390I	CCNGG	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	31, 552
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	43, 512
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	43, 512
BseGI	GGATG	1 cut(s)	522
BseJI	GATNNNNATC	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	4 cut(s)	193, 487, 490, 610
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	49, 163, 373
Bsp68I	TCGCGA	1 cut(s)	426
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	43, 512
BssMI	GATC	3 cut(s)	49, 163, 373
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	4 cut(s)	10, 172, 285, 577
BstC8I	GCNNGC	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	3 cut(s)	52, 166, 376
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	3 cut(s)	49, 163, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	193, 487, 490, 610
BstV2I	GAAGAC	2 cut(s)	31, 552
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	522
BtuMI	TCGCGA	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	1 cut(s)	617
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	91, 154, 320
CviAII	CATG	4 cut(s)	88, 439, 550, 618
CviJI	RGCY	7 cut(s)	23, 34, 119, 184, 231, 275, 481
CviKI_1	RGCY	7 cut(s)	23, 34, 119, 184, 231, 275, 481
CviQI	GTAC	3 cut(s)	91, 154, 320
DpnI	GATC	3 cut(s)	51, 165, 375
DpnII	GATC	3 cut(s)	49, 163, 373
EaeI	YGGCCR	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	4 cut(s)	91, 442, 553, 621
FaiI	YATR	6 cut(s)	89, 267, 440, 551, 591, 619
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	4 cut(s)	87, 438, 549, 617
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	4 cut(s)	182, 501, 504, 599
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	182, 501, 504, 599
FspBI	CTAG	2 cut(s)	453, 622
FspI	TGCGCA	1 cut(s)	616
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	4 cut(s)	182, 501, 504, 599
HaeIII	GGCC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	4 cut(s)	91, 442, 553, 621
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	7 cut(s)	129, 210, 217, 223, 242, 413, 435
HpaI	GTTAAC	1 cut(s)	580
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	562, 580
Hpy188I	TCNGA	2 cut(s)	168, 222
Hpy188III	TCNNGA	3 cut(s)	214, 397, 425
Hpy8I	GTNNAC	2 cut(s)	562, 580
Hpy99I	CGWCG	3 cut(s)	10, 62, 383
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	4 cut(s)	10, 172, 285, 577
HpyCH4V	TGCA	4 cut(s)	181, 197, 254, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	91, 442, 553, 621
HspAI	GCGC	1 cut(s)	615
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	49, 163, 373
Lsp1109I	GCAGC	4 cut(s)	193, 487, 490, 610
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	453, 622
MalI	GATC	3 cut(s)	51, 165, 375
MboI	GATC	3 cut(s)	49, 163, 373
MboII	GAAGA	5 cut(s)	31, 173, 237, 522, 557
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	2 cut(s)	98, 495
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	226, 444
MnlI	CCTC	7 cut(s)	27, 53, 307, 397, 492, 599, 602
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	3 cut(s)	294, 471, 579
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	3 cut(s)	49, 163, 373
NlaIII	CATG	4 cut(s)	91, 442, 553, 621
NmeAIII	GCCGAG	1 cut(s)	24
NruI	TCGCGA	1 cut(s)	426
NsbI	TGCGCA	1 cut(s)	616
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 172
PfeI	GAWTC	5 cut(s)	129, 210, 223, 242, 413
PflFI	GACNNNGTC	2 cut(s)	10, 551
PkrI	GCNGC	4 cut(s)	183, 502, 505, 600
PleI	GAGTC	2 cut(s)	225, 443
PpsI	GAGTC	2 cut(s)	225, 443
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	199
PsyI	GACNNNGTC	2 cut(s)	10, 551
RruI	TCGCGA	1 cut(s)	426
RsaI	GTAC	3 cut(s)	92, 155, 321
RsaNI	GTAC	3 cut(s)	91, 154, 320
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	294, 471, 579
SatI	GCNGC	4 cut(s)	182, 501, 504, 599
Sau3AI	GATC	3 cut(s)	49, 163, 373
SchI	GAGTC	2 cut(s)	226, 444
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	6 cut(s)	36, 159, 186, 233, 567, 613
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	2 cut(s)	98, 495
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	453, 622
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	4 cut(s)	10, 172, 285, 577
TaqI	TCGA	5 cut(s)	102, 132, 381, 398, 555
TasI	AATT	2 cut(s)	98, 495
TfiI	GAWTC	5 cut(s)	129, 210, 223, 242, 413
Tru1I	TTAA	3 cut(s)	294, 471, 579
Tru9I	TTAA	3 cut(s)	294, 471, 579
TseI	GCWGC	4 cut(s)	181, 500, 503, 598
TspDTI	ATGAA	2 cut(s)	76, 433
TspGWI	ACGGA	3 cut(s)	46, 337, 479
Tth111I	GACNNNGTC	2 cut(s)	10, 551
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	2 cut(s)	453, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.