Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Reverse (-)

24627318 .. 24630043

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTAGGTACGTAAATTTAAGAAGAGATGAGGGGCAAATTCGGGTAGTAAACAAAATATCAAAGATTTCTGACTTTTGCTGGTTTCGTCGTGGTTGGCGGTTTCCCCTCGCCCCCTATATAAACACGTTCAACTCAAAAAATCGAAAAAAAAACATAACGCAGAGTCAATGTTTTGGATTCAGATCCAAAAAAGCAGTCGGAAGAAAACGAAAACGAAAACGAATTGAGGGAGCTGAAACAAAATTAATCAAATCAATCTTGAAAATGGCGACGGTATCCCCTCTGGCCAAATACAAGCTCGTCTTCCTCGGCGATCAGTCCGTCGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACTTATCAGGCTACGATTGGAATCGATTTTCTGTCAAAAACGATGTACCTTGAAGATCGGACAGTTCGTTTGCAGCTCTGGGATACTGCAGGGCAAGAAAGATTTAGGAGTCTGATTCCAAGCTATATCAGGGATTCTTCTGTTGCTGTAATCGTCTATGATGTAGCCAATAGGCAGTCATTTCTGAACACCAATAAGTGGATTGAGGAAGTACGGACAGAACGGGGGACTGATGTCATCATCGTGCTTGTGGGGAACAAGACTGATCTCCAAGTCTCGATAGAGGAAGGAGATTCAAAATCTCGTGAGTTCGGAGTCATGTTCATTGAAACTAGTGCAAAAGCAGGATTTAACATCAAGCCTCTGTTCCGTAAAATTGCGGCTGCATTGCCAGGGATGGAAACCCTTTCTTCCACAAAACAGGAAGACATGGTCGATGTAAATCTAAGGGCGACTGTTAACTCATCCCAAACAGAGCAGCAAGGGGGAGGCTGTGCGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

293

Amino Acids

33.33

Weight (kDa)

9.93

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	573
AciI	CCGC	3 cut(s)	100, 349, 755
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	16, 39, 365
AfaI	GTAC	4 cut(s)	11, 359, 422, 588
AfiI	CCNNNNNNNGG	1 cut(s)	573
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	5 cut(s)	133, 265, 428, 672, 704
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	4 cut(s)	236, 301, 451, 498
AluI	AGCT	4 cut(s)	236, 301, 451, 498
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	448, 758, 853
ApoI	RAATTY	3 cut(s)	16, 39, 365
ArsI	GACNNNNNNTTYG	4 cut(s)	183, 215, 427, 459
AseI	ATTAAT	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	290
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	298, 807
BbvI	GCAGC	3 cut(s)	460, 745, 865
BccI	CCATC	1 cut(s)	766
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	2 cut(s)	289, 451
BcoDI	GTCTC	1 cut(s)	655
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	2 cut(s)	708, 877
BfmI	CTRYAG	1 cut(s)	462
BfuI	GTATCC	2 cut(s)	289, 451
BisI	GCNGC	4 cut(s)	449, 756, 759, 854
BlsI	GCNGC	4 cut(s)	450, 757, 760, 855
Bme1390I	CCNGG	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	1 cut(s)	348
BoxI	GACNNNNGTC	1 cut(s)	608
BpiI	GAAGAC	2 cut(s)	298, 807
Bsa29I	ATCGAT	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	3 cut(s)	184, 395, 816
BsaJI	CCNNGG	2 cut(s)	310, 767
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	761
Bse8I	GATNNNNATC	3 cut(s)	184, 395, 816
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	310, 767
BseGI	GGATG	2 cut(s)	777, 839
BseJI	GATNNNNATC	3 cut(s)	184, 395, 816
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	460, 745, 865
BshFI	GGCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	185, 316, 430, 640
BspACI	CCGC	3 cut(s)	100, 349, 755
BspANI	GGCC	1 cut(s)	290
BspDI	ATCGAT	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	310, 767
BssMI	GATC	4 cut(s)	185, 316, 430, 640
BssSI	CACGAG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	277, 439, 832
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	777, 839
BstKTI	GATC	4 cut(s)	188, 319, 433, 643
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	4 cut(s)	185, 316, 430, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 873
BstNI	CCWGG	1 cut(s)	768
BstPAI	GACNNNNGTC	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	462
BstSNI	TACGTA	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	460, 745, 865
BstV2I	GAAGAC	2 cut(s)	298, 807
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	399
BsuI	GTATCC	2 cut(s)	289, 451
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	777, 839
Cac8I	GCNNGC	1 cut(s)	874
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	4 cut(s)	10, 358, 421, 587
CviAII	CATG	3 cut(s)	355, 694, 805
CviQI	GTAC	4 cut(s)	10, 358, 421, 587
DdeI	CTNAG	1 cut(s)	821
DpnI	GATC	4 cut(s)	187, 318, 432, 642
DpnII	GATC	4 cut(s)	185, 316, 430, 640
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco105I	TACGTA	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	766
FaeI	CATG	3 cut(s)	358, 697, 808
FaiI	YATR	8 cut(s)	120, 122, 158, 356, 501, 534, 695, 806
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	3 cut(s)	354, 693, 804
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	449, 756, 759, 854
FokI	GGATG	2 cut(s)	784, 826
Fsp4HI	GCNGC	4 cut(s)	449, 756, 759, 854
FspBI	CTAG	2 cut(s)	708, 877
GluI	GCNGC	4 cut(s)	449, 756, 759, 854
HaeIII	GGCC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	358, 697, 808
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	8 cut(s)	166, 180, 396, 484, 490, 509, 668, 690
HpaI	GTTAAC	1 cut(s)	835
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	52, 835
Hpy188I	TCNGA	7 cut(s)	73, 185, 203, 435, 489, 561, 689
Hpy188III	TCNNGA	3 cut(s)	262, 652, 680
Hpy8I	GTNNAC	2 cut(s)	52, 835
Hpy99I	CGWCG	3 cut(s)	93, 277, 329
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	3 cut(s)	277, 439, 832
HpyCH4IV	ACGT	2 cut(s)	12, 128
HpyCH4V	TGCA	4 cut(s)	448, 464, 713, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 873
HpyF3I	CTNAG	1 cut(s)	821
HpySE526I	ACGT	2 cut(s)	12, 128
Hsp92II	CATG	3 cut(s)	358, 697, 808
KspAI	GTTAAC	1 cut(s)	835
Kzo9I	GATC	4 cut(s)	185, 316, 430, 640
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	460, 745, 865
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	708, 877
MaeII	ACGT	2 cut(s)	12, 128
MalI	GATC	4 cut(s)	187, 318, 432, 642
MboI	GATC	4 cut(s)	185, 316, 430, 640
MboII	GAAGA	7 cut(s)	36, 216, 298, 440, 504, 777, 812
MflI	RGATCY	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	16, 39, 225, 245, 365, 750
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	3 cut(s)	175, 493, 699
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	9 cut(s)	25, 119, 223, 294, 320, 574, 652, 747, 857
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	20, 248, 726, 834
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	336, 873
NdeII	GATC	4 cut(s)	185, 316, 430, 640
NlaIII	CATG	3 cut(s)	358, 697, 808
NmeAIII	GCCGAG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 439
PfeI	GAWTC	5 cut(s)	180, 396, 490, 509, 668
PflFI	GACNNNGTC	1 cut(s)	806
PflMI	CCANNNNNTGG	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	450, 757, 760, 855
PleI	GAGTC	3 cut(s)	174, 492, 698
PpsI	GAGTC	3 cut(s)	174, 492, 698
Ppu21I	YACGTR	1 cut(s)	13
PshAI	GACNNNNGTC	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	806
RsaI	GTAC	4 cut(s)	11, 359, 422, 588
RsaNI	GTAC	4 cut(s)	10, 358, 421, 587
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	4 cut(s)	20, 248, 726, 834
SatI	GCNGC	4 cut(s)	449, 756, 759, 854
Sau3AI	GATC	4 cut(s)	185, 316, 430, 640
SchI	GAGTC	3 cut(s)	175, 493, 699
ScrFI	CCNGG	1 cut(s)	768
SetI	ASST	8 cut(s)	11, 15, 131, 238, 303, 426, 453, 500
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	617
SnaBI	TACGTA	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	6 cut(s)	16, 39, 225, 245, 365, 750
SsiI	CCGC	3 cut(s)	100, 349, 755
SspMI	CTAG	2 cut(s)	708, 877
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	3 cut(s)	277, 439, 832
TaiI	ACGT	2 cut(s)	15, 131
TaqI	TCGA	5 cut(s)	145, 369, 399, 653, 810
TasI	AATT	6 cut(s)	16, 39, 225, 245, 365, 750
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	5 cut(s)	180, 396, 490, 509, 668
Tru1I	TTAA	4 cut(s)	20, 248, 726, 834
Tru9I	TTAA	4 cut(s)	20, 248, 726, 834
TseI	GCWGC	3 cut(s)	448, 758, 853
TspDTI	ATGAA	2 cut(s)	343, 688
TspGWI	ACGGA	3 cut(s)	313, 604, 734
Tth111I	GACNNNGTC	1 cut(s)	806
Van91I	CCANNNNNTGG	1 cut(s)	573
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	3 cut(s)	16, 39, 365
XspI	CTAG	2 cut(s)	708, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.