Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Forward (+)

3219677 .. 3221515

Gene Structure 1839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGAGTGTGTCACCATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGGCAACCATTGGAATTGATTTTTTGTCAAAAACAATGTACCTTGAGGATAGGACTGTTCGTCTCCAACTATGGGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAATAGGCAGTCATTCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGCCACTTTTTCGCAAGATTGCAGCAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAACAAGAGGATATGGTTGATGTGAATCTAAAGACTTCGAGCAATTCGGCTCAAGGGGAGCAACAACGAGGTGGTTGTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

7.67

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	1.6e-14	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.1e-57	Ras family
Roc	PF08477	11 - 125	3.6e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	5.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	4 cut(s)	29, 92, 155, 325
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	295, 534
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	2 cut(s)	34, 422
AluI	AGCT	2 cut(s)	34, 422
Alw26I	GTCTC	2 cut(s)	182, 443
ApeKI	GCWGC	2 cut(s)	500, 503
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AsuHPI	GGTGA	2 cut(s)	6, 422
AsuII	TTCGAA	1 cut(s)	214
BauI	CACGAG	2 cut(s)	35, 423
BbvI	GCAGC	2 cut(s)	512, 515
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	182, 443
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	501, 504
BlsI	GCNGC	2 cut(s)	502, 505
Bme1390I	CCNGG	1 cut(s)	513
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	179, 573
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	299, 322
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	512, 515
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	182, 443
BsmBI	CGTCTC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	49, 373
BspMAI	CTGCAG	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	49, 373
BssSI	CACGAG	2 cut(s)	35, 423
BssT1I	CCWWGG	1 cut(s)	43
Bst2BI	CACGAG	2 cut(s)	35, 423
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	299, 322
BstKTI	GATC	2 cut(s)	52, 376
BstMAI	GTCTC	2 cut(s)	182, 443
BstMBI	GATC	2 cut(s)	49, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	512, 515
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	299, 322
BtsIMutI	CAGTG	1 cut(s)	460
Csp6I	GTAC	4 cut(s)	28, 91, 154, 324
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	34, 422, 481, 587
CviKI_1	RGCY	4 cut(s)	34, 422, 481, 587
CviQI	GTAC	4 cut(s)	28, 91, 154, 324
DpnI	GATC	2 cut(s)	51, 375
DpnII	GATC	2 cut(s)	49, 373
DriI	GACNNNNNGTC	1 cut(s)	174
Eam1105I	GACNNNNNGTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	89, 187, 234, 267, 432, 551
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	501, 504
FokI	GGATG	2 cut(s)	286, 329
Fsp4HI	GCNGC	2 cut(s)	501, 504
GluI	GCNGC	2 cut(s)	501, 504
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	242, 562
HphI	GGTGA	2 cut(s)	6, 422
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	292, 425
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	197, 275, 458, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	49, 373
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	9 cut(s)	82, 101, 183, 188, 341, 450, 466, 498, 525
Lsp1109I	GCAGC	2 cut(s)	512, 515
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	12, 362, 507
MalI	GATC	2 cut(s)	51, 375
MboI	GATC	2 cut(s)	49, 373
MboII	GAAGA	2 cut(s)	237, 522
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	4 cut(s)	98, 129, 258, 580
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	154, 307, 326, 397, 538, 599
MseI	TTAA	2 cut(s)	471, 622
MslI	CAYNNNNRTG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	49, 373
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	242, 562
PkrI	GCNGC	2 cut(s)	502, 505
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	4 cut(s)	29, 92, 155, 325
RsaNI	GTAC	4 cut(s)	28, 91, 154, 324
RseI	CAYNNNNRTG	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	471, 622
SatI	GCNGC	2 cut(s)	501, 504
Sau3AI	GATC	2 cut(s)	49, 373
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	6 cut(s)	36, 159, 337, 412, 424, 610
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	158, 588
SmoI	CTYRAG	2 cut(s)	158, 588
Sse9I	AATT	4 cut(s)	98, 129, 258, 580
SspI	AATATT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	5 cut(s)	102, 214, 381, 398, 575
TasI	AATT	4 cut(s)	98, 129, 258, 580
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	242, 562
Tru1I	TTAA	2 cut(s)	471, 622
Tru9I	TTAA	2 cut(s)	471, 622
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	2 cut(s)	500, 503
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	76, 433
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.