Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Reverse (-)

13001378 .. 13004031

Gene Structure 2654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGACGGTGTCCCCTCTGGCCAAATACAAGCTCGTCTTCCTCGGCGATCAGTCCGTCGGCAAAACCAGCATCATCACCCGCTTCATGTATGACAAATTCGACACAACCTATCAGGCTACGATTGGAATTGATTTTCTGTCCAAAACAATGTACCTTGAAGATCGGACAGTTCGTTTGCAGCTTTGGGATACTGCAGGGCAAGAGAGATTTAGGAGTCTCATTCCAAGCTACATCAGGGATTCTTCTGTTGCTGTAATCGTCTATGATGTAGCTAATAGACAATCATTTTTGAACACTAATAAATGGATTGAAGAAGTAAGGACAGAACGGGGTACTGATGTCATTATCGTGCTTGTTGGGAACAAAACCGATCTTGTAGATAAGAGACAAGTTTCTATAGAGGAAGGAGATTCCAAATCTCGGGAGTTTGGAGTCATGTTCATAGAAACCAGCGCCAAAGCAGGATTCAATATCAAGCCTCTATTCCGTAAGATTGCTTCTTCGTTGCCGGGGATGGAAACCCTTTCCTCCACAAAACAGGAAGATATGGTTGATGTAAACCTGAAGCCCACTGTTAATTCATCCAACGCCGATCAGCAAGGAGGAGGTTGTGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

23.16

Weight (kDa)

6.38

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	1.1e-14	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.6e-57	Ras family
Roc	PF08477	11 - 125	1.2e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	1.4e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	155, 337
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	161, 295, 314, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	34, 184, 231, 275
AluI	AGCT	4 cut(s)	34, 184, 231, 275
Alw26I	GTCTC	2 cut(s)	224, 382
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	423
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BalI	TGGCCA	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	511
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	224, 382
BfaI	CTAG	1 cut(s)	622
BfmI	CTRYAG	2 cut(s)	195, 399
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	513
BmeT110I	CYCGRG	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	43, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	43, 512
BseGI	GGATG	2 cut(s)	522, 584
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	224, 382
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	49, 163, 373, 595
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	43, 512
BssMI	GATC	4 cut(s)	49, 163, 373, 595
Bst4CI	ACNGT	3 cut(s)	10, 172, 577
BstC8I	GCNNGC	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	522, 584
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	52, 166, 376, 598
BstMAI	GTCTC	2 cut(s)	224, 382
BstMBI	GATC	4 cut(s)	49, 163, 373, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	195, 399
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	522, 584
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	154, 336
CviAII	CATG	3 cut(s)	88, 439, 618
CviJI	RGCY	8 cut(s)	23, 34, 119, 184, 231, 275, 481, 571
CviKI_1	RGCY	8 cut(s)	23, 34, 119, 184, 231, 275, 481, 571
CviQI	GTAC	2 cut(s)	154, 336
DpnI	GATC	4 cut(s)	51, 165, 375, 597
DpnII	GATC	4 cut(s)	49, 163, 373, 595
EaeI	YGGCCR	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	423
FaeI	CATG	3 cut(s)	91, 442, 621
FaiI	YATR	8 cut(s)	89, 93, 267, 401, 440, 446, 551, 619
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	3 cut(s)	87, 438, 617
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	2 cut(s)	529, 571
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	622
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	3 cut(s)	91, 442, 621
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	5 cut(s)	217, 242, 413, 435, 468
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	10, 62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	10, 172, 577
HpyCH4V	TGCA	3 cut(s)	181, 197, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	91, 442, 621
HspAI	GCGC	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	49, 163, 373, 595
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	622
MalI	GATC	4 cut(s)	51, 165, 375, 597
MboI	GATC	4 cut(s)	49, 163, 373, 595
MboII	GAAGA	6 cut(s)	31, 173, 237, 326, 495, 557
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	98, 129, 580
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	226, 444
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	7 cut(s)	27, 53, 397, 492, 541, 599, 602
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	49, 163, 373, 595
NlaIII	CATG	3 cut(s)	91, 442, 621
NmeAIII	GCCGAG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	242, 413, 468
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	2 cut(s)	225, 443
PpsI	GAGTC	2 cut(s)	225, 443
PstI	CTGCAG	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	2 cut(s)	155, 337
RsaNI	GTAC	2 cut(s)	154, 336
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	4 cut(s)	49, 163, 373, 595
SchI	GAGTC	2 cut(s)	226, 444
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	8 cut(s)	36, 113, 159, 186, 233, 277, 567, 613
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	195, 399
SmiMI	CAYNNNNRTG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	3 cut(s)	98, 129, 580
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	622
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	10, 172, 577
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	98, 129, 580
TfiI	GAWTC	3 cut(s)	242, 413, 468
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	76, 433, 573
TspGWI	ACGGA	2 cut(s)	46, 479
TspRI	CASTG	1 cut(s)	580
Tth111I	GACNNNGTC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.