Rroxscaffold_2G00129950

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
66043841 .. 66046207
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129950.1

Sequence Viewer

Length: 663 bp
ATGGCGACGGTGTCCCCTCTGGCGAAATACAAGCTCGTCTTCCTCGGCGATCAGTCCGTCGGCAAAACCAGCATCATCACCCGCTTCATGTATGACAAATTCGATTCAACCTATCAGGCTACGATTGGAATTGATTTTCTGTCGAAAACGATGTACCTTGAAGATCGGACAGTTCGTTTGCAGCTTTGGGATACTGCAGGGCAAGAGAGGTTTAGGAGTCTCATTCCAAGCTACATCAGGGATTCTTCTGTTGCAGTAATCGTCTATGATGTAGCTAATAGACAATCATTTCTGAACACTAATAAATGGATTGAAGAAGTACGAACAGAACGGGGTACTGATGTCATTATCGTGCTTGTTGGGAACAAAACTGATCTCGTTGATAAGAGACAAGTTTCTATAGAGGAAGGAGATTCCAAATCTCGTGAGTTTGGAGTCATGTTCATAGAAACCAGCGCCAAAGCAGGATTCAATATCAAGCCACTATTCCGTAAGATTGCTTCTGCGCTGCCAGGGATGGAAACCCTTTCCTCCACGAAACAGGAAGATATGGTTGATGTAAACCTGAAGCCCACTGTGAATTCATCCAACGCAGATCAGCAGGGGGAGGTTGTGCGTGCTAGGCTATTCATTTTACTGAAAAGAAAAGGAAAAAGCAGTTAG

Protein Analysis

220

Amino Acids

24.83

Weight (kDa)

9.32

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 130 2.7e-14 ADP-ribosylation factor family
Ras PF00071 11 - 169 1.9e-57 Ras family
Roc PF08477 11 - 125 1.5e-37 Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU PF00009 43 - 171 1.4e-06 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011740)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 98, 580
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 3 cut(s) 155, 321, 337
AgsI TTSAA 4 cut(s) 108, 161, 314, 472
AjnI CCWGG 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 34, 184, 231, 275
AluI AGCT 4 cut(s) 34, 184, 231, 275
Alw26I GTCTC 2 cut(s) 224, 382
ApeKI GCWGC 2 cut(s) 181, 508
ApoI RAATTY 2 cut(s) 98, 580
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspLEI GCGC 2 cut(s) 458, 508
AsuHPI GGTGA 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 327, 360
BarI GAAGNNNNNNTAC 2 cut(s) 484, 516
BauI CACGAG 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 193, 495
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 513
BciVI GTATCC 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 224, 382
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 195, 399
BfoI RGCGCY 1 cut(s) 459
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 2 cut(s) 182, 509
BlsI GCNGC 2 cut(s) 183, 510
Bme1390I CCNGG 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 43, 512
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 43, 512
BseGI GGATG 2 cut(s) 522, 584
BseXI GCAGC 2 cut(s) 193, 495
BsmAI GTCTC 2 cut(s) 224, 382
Bsp143I GATC 4 cut(s) 49, 163, 373, 595
BspACI CCGC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 43, 512
BssMI GATC 4 cut(s) 49, 163, 373, 595
BssSI CACGAG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 10, 172, 577
BstC8I GCNNGC 1 cut(s) 618
BstF5I GGATG 2 cut(s) 522, 584
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 2 cut(s) 458, 508
BstKTI GATC 4 cut(s) 52, 166, 376, 598
BstMAI GTCTC 2 cut(s) 224, 382
BstMBI GATC 4 cut(s) 49, 163, 373, 595
BstMWI GCNNNNNNNGC 2 cut(s) 69, 622
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 2 cut(s) 195, 399
BstV1I GCAGC 2 cut(s) 193, 495
BstV2I GAAGAC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 522, 584
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 2 cut(s) 458, 508
Csp6I GTAC 3 cut(s) 154, 320, 336
CviAII CATG 2 cut(s) 88, 439
CviJI RGCY 8 cut(s) 34, 119, 184, 231, 275, 481, 571, 625
CviKI_1 RGCY 8 cut(s) 34, 119, 184, 231, 275, 481, 571, 625
CviQI GTAC 3 cut(s) 154, 320, 336
DpnI GATC 4 cut(s) 51, 165, 375, 597
DpnII GATC 4 cut(s) 49, 163, 373, 595
Eco57I CTGAAG 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 511
FaeI CATG 2 cut(s) 91, 442
FaiI YATR 7 cut(s) 89, 93, 267, 401, 440, 446, 551
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 2 cut(s) 87, 438
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 2 cut(s) 182, 509
FokI GGATG 2 cut(s) 529, 571
Fsp4HI GCNGC 2 cut(s) 182, 509
FspBI CTAG 1 cut(s) 621
GlaI GCGC 2 cut(s) 457, 507
GluI GCNGC 2 cut(s) 182, 509
HaeII RGCGCY 1 cut(s) 459
HhaI GCGC 2 cut(s) 458, 508
Hin1II CATG 2 cut(s) 91, 442
Hin6I GCGC 2 cut(s) 456, 506
HinP1I GCGC 2 cut(s) 456, 506
HinfI GANTC 6 cut(s) 104, 217, 242, 413, 435, 468
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 2 cut(s) 168, 294
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 562
Hpy99I CGWCG 2 cut(s) 10, 62
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 3 cut(s) 10, 172, 577
HpyCH4V TGCA 3 cut(s) 181, 197, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 622
Hsp92II CATG 2 cut(s) 91, 442
HspAI GCGC 2 cut(s) 456, 506
Kzo9I GATC 4 cut(s) 49, 163, 373, 595
Lsp1109I GCAGC 2 cut(s) 193, 495
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 621
MalI GATC 4 cut(s) 51, 165, 375, 597
MboI GATC 4 cut(s) 49, 163, 373, 595
MboII GAAGA 5 cut(s) 31, 173, 237, 326, 557
MluCI AATT 3 cut(s) 98, 129, 580
MlyI GAGTC 2 cut(s) 226, 444
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 6 cut(s) 27, 53, 201, 397, 541, 601
MslI CAYNNNNRTG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 2 cut(s) 69, 622
NdeII GATC 4 cut(s) 49, 163, 373, 595
NlaIII CATG 2 cut(s) 91, 442
NmeAIII GCCGAG 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PfeI GAWTC 4 cut(s) 104, 242, 413, 468
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 183, 510
PleI GAGTC 2 cut(s) 225, 443
PpsI GAGTC 2 cut(s) 225, 443
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PstI CTGCAG 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 3 cut(s) 155, 321, 337
RsaNI GTAC 3 cut(s) 154, 320, 336
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 2 cut(s) 182, 509
Sau3AI GATC 4 cut(s) 49, 163, 373, 595
SchI GAGTC 2 cut(s) 226, 444
ScrFI CCNGG 1 cut(s) 513
SetI ASST 9 cut(s) 36, 113, 159, 186, 212, 233, 277, 567, 612
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 195, 399
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 3 cut(s) 98, 129, 580
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 3 cut(s) 10, 172, 577
TaqI TCGA 2 cut(s) 102, 143
TasI AATT 3 cut(s) 98, 129, 580
TfiI GAWTC 4 cut(s) 104, 242, 413, 468
TscAI CASTG 1 cut(s) 580
TseI GCWGC 2 cut(s) 181, 508
TspDTI ATGAA 4 cut(s) 76, 433, 573, 619
TspGWI ACGGA 2 cut(s) 46, 479
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 1 cut(s) 10
XapI RAATTY 2 cut(s) 98, 580
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.