Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011740

Physical Location & Seq

Genomic Coordinates Forward (+)

19577372 .. 19581062

Gene Structure 3691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G187300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGACGGTGTCTCCTCTGGCTAAATACAAGCTGGTCTTCCTGGGCGATCAGTCCGTCGGAAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGATACCACCTATCAGGCTACGATTGGGATTGATTTTCTGTCGAAAACGATGTACCTTGAAGATCGGACAGTTCGTTTGCAGCTTTGGGATACTGCAGGGCAAGAAAGATTTAGGAGTCTCATTCCAAGCTACATCAGGGATTCCTCTGTTGCAGTGATTGTTTATGATGTAGCTAATAGACAGTCATTTCTGAACACTAATAAGTGGATAGAGGAAGTACGAACAGAACGAGGAACTGATGTCATTATCGTGCTTGTGGGGAACAAAACTGATCTCGTTGATAAAAGACAAGTCTCTATAGAGGAAGGGGATTCCAAATCTCGTGAATTTGGAGTCATGTTCATTGAAACTAGTGCAAAAGCAGGATTTAATATCAAGCCTTTATTCCGCAAGATTGCTGCTGCATTACCAGGGATGGAAGCCCTTTCTTCAACAAAACAGGAAGACATGGTCGATGTAAACCTGAAGCCGACAACTAATTCATCCCACACAGAGCAGCAAGGAGGGTGTGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

23.11

Weight (kDa)

6.62

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22290 AT4G39890 AT5G10260
fragaria_vesca	FvH4_1g20860
malus_domestica	MD01G1030600.v1.1 MD15G1323700.v1.1
prunus_persica	Prupe.6G187300_v2.0.a1
pyrus_communis	pycom01g05820 pycom15g28560
rosa_chinensis	RchiOBHm_Chr2g0113471
rosa_laevigata	RLG00000018067
rosa_roxburghii	Rroxscaffold_2G00129220 Rroxscaffold_2G00129950
rosa_rugosa	Rorug02G0187700
rosa_samantha	Rh2AG242200 Rh2BG256200 Rh2DG250200
rosa_wichuraiana	Rw0G018870 Rw2G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 490
AcsI	RAATTY	2 cut(s)	98, 428
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	92, 155, 321
AgsI	TTSAA	3 cut(s)	161, 449, 534
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	42, 511
AluBI	AGCT	4 cut(s)	34, 184, 231, 275
AluI	AGCT	4 cut(s)	34, 184, 231, 275
Alw26I	GTCTC	3 cut(s)	18, 224, 400
ApeKI	GCWGC	4 cut(s)	181, 500, 503, 598
ApoI	RAATTY	2 cut(s)	98, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AsuHPI	GGTGA	1 cut(s)	70
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	2 cut(s)	31, 552
BbvI	GCAGC	4 cut(s)	193, 487, 490, 610
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	2 cut(s)	44, 513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	18, 224, 400
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 619
BfmI	CTRYAG	2 cut(s)	195, 399
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	182, 501, 504, 599
BlsI	GCNGC	4 cut(s)	183, 502, 505, 600
Bme1390I	CCNGG	2 cut(s)	44, 513
BmrFI	CCNGG	2 cut(s)	44, 513
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	31, 552
BsaJI	CCNNGG	2 cut(s)	43, 512
BsaXI	ACNNNNNCTCC	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	44, 513
BseDI	CCNNGG	2 cut(s)	43, 512
BseGI	GGATG	2 cut(s)	522, 584
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	4 cut(s)	193, 487, 490, 610
BsmAI	GTCTC	3 cut(s)	18, 224, 400
Bsp143I	GATC	3 cut(s)	49, 163, 373
BspACI	CCGC	2 cut(s)	82, 490
BspMAI	CTGCAG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	43, 512
BssMI	GATC	3 cut(s)	49, 163, 373
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	44, 513
Bst4CI	ACNGT	3 cut(s)	10, 172, 285
BstC8I	GCNNGC	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	522, 584
BstKTI	GATC	3 cut(s)	52, 166, 376
BstMAI	GTCTC	3 cut(s)	18, 224, 400
BstMBI	GATC	3 cut(s)	49, 163, 373
BstNI	CCWGG	2 cut(s)	44, 513
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	2 cut(s)	42, 511
BstSFI	CTRYAG	2 cut(s)	195, 399
BstV1I	GCAGC	4 cut(s)	193, 487, 490, 610
BstV2I	GAAGAC	2 cut(s)	31, 552
BsuI	GTATCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	522, 584
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	616
Csp6I	GTAC	3 cut(s)	91, 154, 320
CviAII	CATG	4 cut(s)	88, 439, 550, 615
CviJI	RGCY	9 cut(s)	23, 34, 119, 184, 231, 275, 481, 524, 571
CviKI_1	RGCY	9 cut(s)	23, 34, 119, 184, 231, 275, 481, 524, 571
CviQI	GTAC	3 cut(s)	91, 154, 320
DpnI	GATC	3 cut(s)	51, 165, 375
DpnII	GATC	3 cut(s)	49, 163, 373
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	42, 511
FaeI	CATG	4 cut(s)	91, 442, 553, 618
FaiI	YATR	6 cut(s)	89, 267, 401, 440, 551, 616
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	4 cut(s)	87, 438, 549, 614
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	4 cut(s)	182, 501, 504, 599
FokI	GGATG	2 cut(s)	529, 571
Fsp4HI	GCNGC	4 cut(s)	182, 501, 504, 599
FspBI	CTAG	2 cut(s)	453, 619
GluI	GCNGC	4 cut(s)	182, 501, 504, 599
Hin1II	CATG	4 cut(s)	91, 442, 553, 618
HinfI	GANTC	4 cut(s)	217, 242, 413, 435
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	3 cut(s)	62, 168, 294
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	10, 62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	10, 172, 285
HpyCH4V	TGCA	6 cut(s)	181, 197, 254, 458, 506, 614
Hsp92II	CATG	4 cut(s)	91, 442, 553, 618
Kzo9I	GATC	3 cut(s)	49, 163, 373
Lsp1109I	GCAGC	4 cut(s)	193, 487, 490, 610
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	453, 619
MalI	GATC	3 cut(s)	51, 165, 375
MboI	GATC	3 cut(s)	49, 163, 373
MboII	GAAGA	4 cut(s)	31, 173, 522, 557
MluCI	AATT	3 cut(s)	98, 428, 580
MlyI	GAGTC	2 cut(s)	226, 444
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	27, 256, 307, 326, 397, 599
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	44, 513
MvaI	CCWGG	2 cut(s)	44, 513
NdeII	GATC	3 cut(s)	49, 163, 373
NlaIII	CATG	4 cut(s)	91, 442, 553, 618
NspI	RCATGY	1 cut(s)	618
PaeI	GCATGC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 172, 328
PfeI	GAWTC	2 cut(s)	242, 413
PflFI	GACNNNGTC	2 cut(s)	10, 551
PkrI	GCNGC	4 cut(s)	183, 502, 505, 600
PleI	GAGTC	2 cut(s)	225, 443
PpsI	GAGTC	2 cut(s)	225, 443
Psp6I	CCWGG	2 cut(s)	42, 511
PspGI	CCWGG	2 cut(s)	42, 511
PstI	CTGCAG	1 cut(s)	199
PsyI	GACNNNGTC	2 cut(s)	10, 551
RsaI	GTAC	3 cut(s)	92, 155, 321
RsaNI	GTAC	3 cut(s)	91, 154, 320
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	182, 501, 504, 599
Sau3AI	GATC	3 cut(s)	49, 163, 373
SchI	GAGTC	2 cut(s)	226, 444
ScrFI	CCNGG	2 cut(s)	44, 513
SetI	ASST	7 cut(s)	36, 113, 159, 186, 233, 277, 567
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	195, 399
SmiMI	CAYNNNNRTG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	3 cut(s)	98, 428, 580
SsiI	CCGC	2 cut(s)	82, 490
SspMI	CTAG	2 cut(s)	453, 619
StyD4I	CCNGG	2 cut(s)	42, 511
TaaI	ACNGT	3 cut(s)	10, 172, 285
TaqI	TCGA	3 cut(s)	102, 143, 555
TasI	AATT	3 cut(s)	98, 428, 580
TfiI	GAWTC	2 cut(s)	242, 413
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	4 cut(s)	181, 500, 503, 598
TspDTI	ATGAA	3 cut(s)	76, 433, 573
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	261
Tth111I	GACNNNGTC	2 cut(s)	10, 551
XapI	RAATTY	2 cut(s)	98, 428
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	2 cut(s)	453, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.