Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Forward (+)

9579647 .. 9583901

Gene Structure 4255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGAGAGAAAAGATTCAGATCAGGAAGATCGACAACGCAACGGCGAGACAAGTGACGTTTTCGAAACGAAGAAGAGGGCTTTTCAAGAAAGCTGAAGAACTCTCCGTTCTCTGCGACGCCGATGTCGCTCTCATCATCTTCTCTTCCACCGGAAAACTGTTCGAGTTCTGTAGCTCCAGCATGAAGGAAGTCCTAGAGAGGCATAACTTGCAGTCAAAGAACTTGGAGAAGCTTGATCAGCCATCTCTTGAGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGAGCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTTCAGCAGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGACAAGATTATGAGTGAGATCAGCGAACTTCAGAAAAAGGGAATGCAATTGATGGATGAGAACAAGCGGTTGAGGCAGCAAGGAACGCAACTAACGGAAGAGAACGAGCGACTTGGCATGCAAATATGTAACAATGTGCATGCACACGGTGGTGCTGAATCGGAGAACGCTGCTGTGTACGAGGAAGGACAGTCGTCGGAGTCTATTACTAACGCCGGAAACTCTACCGGAGCGCCTGTTGACTCCGAGAGCTCCGACACTTCCCTTAGGCTCGGCTTACCGTATGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

240

Amino Acids

26.9

Weight (kDa)

5.44

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	92 - 170	2.8e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	305, 496
AcuI	CTGAAG	3 cut(s)	117, 356, 443
AcyI	GRCGYC	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	5 cut(s)	88, 350, 365, 395, 419
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	7 cut(s)	95, 177, 235, 262, 370, 379, 681
AluI	AGCT	7 cut(s)	95, 177, 235, 262, 370, 379, 681
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	3 cut(s)	376, 505, 599
Asp700I	GAANNNNTTC	2 cut(s)	15, 369
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	3 cut(s)	388, 517, 586
BccI	CCATC	2 cut(s)	253, 475
BceAI	ACGGC	1 cut(s)	60
BclI	TGATCA	2 cut(s)	238, 277
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	197, 380
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	665
BisI	GCNGC	3 cut(s)	377, 506, 600
BlsI	GCNGC	3 cut(s)	378, 507, 601
BmgT120I	GGNCC	1 cut(s)	388
BoxI	GACNNNNGTC	1 cut(s)	622
BpmI	CTGGAG	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	152, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	695
Bse8I	GATNNNNATC	1 cut(s)	20
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	388, 517, 586
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	683
BsiSI	CCGG	3 cut(s)	153, 645, 657
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	5 cut(s)	21, 30, 238, 277, 447
BspACI	CCGC	2 cut(s)	305, 496
BspANI	GGCC	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	5 cut(s)	21, 30, 238, 277, 447
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	5 cut(s)	162, 275, 578, 621, 711
Bst6I	CTCTTC	4 cut(s)	70, 151, 360, 522
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	548, 570
BstDEI	CTNAG	2 cut(s)	323, 695
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	5 cut(s)	24, 33, 241, 280, 450
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	5 cut(s)	21, 30, 238, 277, 447
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 211, 241, 376, 502, 514
BstNSI	RCATGY	2 cut(s)	550, 572
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	388, 517, 586
Bsu36I	CCTNAGG	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	548, 570
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	2 cut(s)	128, 415
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	3 cut(s)	184, 547, 569
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	323, 695
DpnI	GATC	5 cut(s)	23, 32, 240, 279, 449
DpnII	GATC	5 cut(s)	21, 30, 238, 277, 447
DraIII	CACNNNGTG	1 cut(s)	578
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	4 cut(s)	70, 151, 360, 522
EarI	CTCTTC	4 cut(s)	70, 151, 360, 522
Ecl136II	GAGCTC	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	681
Eco57I	CTGAAG	3 cut(s)	117, 356, 443
Eco81I	CCTNAGG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	683
FaeI	CATG	3 cut(s)	187, 550, 572
FaiI	YATR	7 cut(s)	185, 207, 440, 548, 556, 570, 714
FatI	CATG	3 cut(s)	183, 546, 568
FbaI	TGATCA	2 cut(s)	238, 277
Fnu4HI	GCNGC	3 cut(s)	377, 506, 600
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	377, 506, 600
FspBI	CTAG	2 cut(s)	197, 380
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	3 cut(s)	377, 506, 600
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	3 cut(s)	153, 645, 657
HgaI	GACGC	2 cut(s)	128, 415
HhaI	GCGC	1 cut(s)	664
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	187, 550, 572
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	16, 587, 629, 671
HpaII	CCGG	3 cut(s)	153, 645, 657
Hpy166II	GTNNAC	2 cut(s)	607, 670
Hpy188I	TCNGA	6 cut(s)	21, 462, 592, 628, 676, 685
Hpy188III	TCNNGA	3 cut(s)	25, 88, 251
Hpy8I	GTNNAC	2 cut(s)	607, 670
Hpy99I	CGWCG	2 cut(s)	122, 628
HpyAV	CCTTC	3 cut(s)	181, 379, 608
HpyCH4III	ACNGT	5 cut(s)	162, 275, 578, 621, 711
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	214, 475, 550, 568, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 211, 241, 376, 502, 514
HpyF3I	CTNAG	2 cut(s)	323, 695
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	187, 550, 572
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	2 cut(s)	238, 277
Kzo9I	GATC	5 cut(s)	21, 30, 238, 277, 447
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	182, 659, 686
LpnPI	CCDG	8 cut(s)	10, 166, 193, 248, 384, 658, 670, 678
Lsp1109I	GCAGC	3 cut(s)	388, 517, 586
MaeI	CTAG	2 cut(s)	197, 380
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	4 cut(s)	55, 255, 428, 557
MalI	GATC	5 cut(s)	23, 32, 240, 279, 449
MboI	GATC	5 cut(s)	21, 30, 238, 277, 447
MboII	GAAGA	8 cut(s)	40, 84, 87, 110, 133, 138, 377, 539
MfeI	CAATTG	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	2 cut(s)	300, 476
MluI	ACGCGT	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	638, 665
MmeI	TCCRAC	2 cut(s)	606, 708
MnlI	CCTC	6 cut(s)	71, 195, 329, 334, 495, 604
MroXI	GAANNNNTTC	2 cut(s)	15, 369
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	3 cut(s)	153, 645, 657
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	477
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	6 cut(s)	128, 211, 241, 376, 502, 514
NdeII	GATC	5 cut(s)	21, 30, 238, 277, 447
NlaIII	CATG	3 cut(s)	187, 550, 572
NmeAIII	GCCGAG	1 cut(s)	681
NmuCI	GTSAC	2 cut(s)	55, 428
NspI	RCATGY	2 cut(s)	550, 572
NspV	TTCGAA	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	579
PaeI	GCATGC	2 cut(s)	550, 572
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	2 cut(s)	15, 369
PfeI	GAWTC	2 cut(s)	16, 587
PkrI	GCNGC	3 cut(s)	378, 507, 601
PleI	GAGTC	2 cut(s)	637, 665
PpsI	GAGTC	2 cut(s)	637, 665
PshAI	GACNNNNGTC	1 cut(s)	622
Psp124BI	GAGCTC	1 cut(s)	683
PspPI	GGNCC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	683
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	3 cut(s)	377, 506, 600
Sau3AI	GATC	5 cut(s)	21, 30, 238, 277, 447
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	638, 665
SduI	GDGCHC	1 cut(s)	683
SetI	ASST	8 cut(s)	62, 97, 179, 237, 264, 372, 381, 683
SfcI	CTRYAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	2 cut(s)	550, 572
Sse9I	AATT	2 cut(s)	300, 476
SsiI	CCGC	2 cut(s)	305, 496
SspMI	CTAG	2 cut(s)	197, 380
SstI	GAGCTC	1 cut(s)	683
TaaI	ACNGT	5 cut(s)	162, 275, 578, 621, 711
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	33, 65, 165
TasI	AATT	2 cut(s)	300, 476
TfiI	GAWTC	2 cut(s)	16, 587
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	55, 428
TseI	GCWGC	3 cut(s)	376, 505, 599
Tsp45I	GTSAC	2 cut(s)	55, 428
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	2 cut(s)	97, 539
TspRI	CASTG	1 cut(s)	280
XceI	RCATGY	2 cut(s)	550, 572
XmnI	GAANNNNTTC	2 cut(s)	15, 369
XspI	CTAG	2 cut(s)	197, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.