Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Reverse (-)

23823971 .. 23829274

Gene Structure 5304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGGGGAGAAGAACTTCATGGATTAAAATTGGAAGAACTGCAACAGCTGGAGAACTCACTTGAATCTGGATTGGGCCGCGTGATTGAGAAAAAGGGTGAAAAGATTATGAAAGAGATCACTGAGCTTCAGAAAAATGCCGTCCAGTTGGTTGAGGAGAATGAACGCTTAAGACAGCAAGTGGTGGAAAGAACCGATGGCAGACGGAGCCATGTTCATGCTGATTCAGAGAACAGGATTACGGAGGAGGGCCAGTCATCAGAGTCCGTAACCAATCTCTGTAACTCTAATAATGCTCCTCAAGACTATGACAGCTCAGATACGTCTCTCAAGTTGGGGCTACCTTATTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

4.91

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	1 - 61	2e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflII	CTTAAG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	3 cut(s)	49, 127, 315
AluI	AGCT	3 cut(s)	49, 127, 315
Alw26I	GTCTC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	76, 250
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	76, 250
AsuHPI	GGTGA	1 cut(s)	110
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	76, 250
BmiI	GGNNCC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	285, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	145, 253
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	114, 330
BseNI	ACTGG	2 cut(s)	145, 253
BseRI	GAGGAG	3 cut(s)	170, 260, 288
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	78, 252
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	78, 252
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	78, 252
BspCNI	CTCAG	2 cut(s)	115, 329
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	145, 253
BssMI	GATC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	123, 316
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstUI	CGCG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	78, 252
BtsIMutI	CAGTG	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	76, 250
CviAII	CATG	3 cut(s)	20, 212, 218
CviJI	RGCY	7 cut(s)	49, 78, 127, 210, 252, 315, 340
CviKI_1	RGCY	7 cut(s)	49, 78, 127, 210, 252, 315, 340
DdeI	CTNAG	2 cut(s)	123, 316
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	23, 215, 221
FaiI	YATR	5 cut(s)	21, 110, 213, 219, 309
FatI	CATG	3 cut(s)	19, 211, 217
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	78, 252
Hin1II	CATG	3 cut(s)	23, 215, 221
HinfI	GANTC	3 cut(s)	65, 224, 263
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	4 cut(s)	132, 229, 262, 319
Hpy188III	TCNNGA	2 cut(s)	69, 302
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	123, 316
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	23, 215, 221
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	207, 301
LpnPI	CCDG	6 cut(s)	35, 54, 158, 220, 266, 336
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	268, 281
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	23, 47
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	148, 238, 241, 309
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	26, 170
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	49
MspCI	CTTAAG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	23, 215, 221
NlaIV	GGNNCC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	65, 224
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	76, 250
PvuII	CAGCTG	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	26, 170
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	76, 250
SchI	GAGTC	1 cut(s)	272
SetI	ASST	5 cut(s)	51, 129, 317, 326, 346
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	3 cut(s)	169, 300, 329
SmoI	CTYRAG	3 cut(s)	169, 300, 329
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	79
TaiI	ACGT	1 cut(s)	326
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	65, 224
Tru1I	TTAA	2 cut(s)	26, 170
Tru9I	TTAA	2 cut(s)	26, 170
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	8, 125, 177, 206
TspGWI	ACGGA	3 cut(s)	220, 256, 257
TspRI	CASTG	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.