Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Reverse (-)

22569319 .. 22573199

Gene Structure 3881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCGGGAGAAGATTCAGATCAAGAAGATTGACAACGCCACAGCGAGGCAGGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTGAAGAAGGCCGAGGAGCTCTCAGTTCTCTGTGATGCAGATATTGCTCTTATTATCTTCTCTTCTACGGGAAAGCTCTTTGAATATGCTAGCTCAAGCATGAAGGAAATCTTAGAAAGGCACCGCTTGCACTCCAAAAATCTCGACAAACTAGAACAACCCTCTCTTGAGTTACAGCTAGTGGAGAACAGCAACTACTCCAGGTTGAGCAAGGAAATAGCAGCAAAAAGCCATCAACTTAGGCAGATGAGGGGAGAAGAACTTCATGGATTAAAATTGGAAGAACTGCAACAGCTGGAGAACTCACTTGAATCTGGATTGGGCCGCGTGATTGGGAAAAAGGGTGAAAAGATTATGAAAGAGATCACTGAGCTTCAGAAAAATGCCGTCCAGTTGATTGAGGAGAATGAACGCTTAAGACAGCAAGTGGTGGAAAGAACTGATGGCAGACGGAGGCATGTTCATGCTGATTCAGAGAACAGGTTTGCGGAGGAGGGCCAGTCATCAGAGTCCGTAACCAATCTCTGTAACTCTAATAATGCTCCTCAAGACTATGAGAGCTCAGATACGTCTCTCAAGTTAGGGCTACCTTATTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

25.99

Weight (kDa)

7.78

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	1.9e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	411
AciI	CCGC	3 cut(s)	208, 409, 572
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	48, 680
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	66, 88, 167, 395
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 645
AluI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 645
Alw21I	GWGCWC	2 cut(s)	105, 647
Alw26I	GTCTC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	93, 406, 580
ApeKI	GCWGC	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	406, 580
AsuHPI	GGTGA	2 cut(s)	67, 440
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	105, 647
Bbv12I	GWGCWC	2 cut(s)	105, 647
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	324, 521
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	3 cut(s)	174, 236, 263
BfrI	CTTAAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	306, 409
BlsI	GCNGC	2 cut(s)	307, 410
Bme1390I	CCNGG	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	406, 580
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	2 cut(s)	268, 401
BpuEI	CTTGAG	4 cut(s)	163, 272, 615, 644
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 680
Bse1I	ACTGG	2 cut(s)	475, 583
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	48, 680
BseMII	CTCAG	3 cut(s)	120, 444, 660
BseNI	ACTGG	2 cut(s)	475, 583
BseRI	GAGGAG	4 cut(s)	113, 500, 590, 618
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	95, 408, 582
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	105, 647
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	48, 680
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsnI	GGCC	3 cut(s)	95, 408, 582
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	105, 647
Bsp143I	GATC	2 cut(s)	21, 447
BspACI	CCGC	3 cut(s)	208, 409, 572
BspANI	GGCC	3 cut(s)	95, 408, 582
BspCNI	CTCAG	3 cut(s)	119, 445, 659
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	475, 583
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	21, 447
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	70, 151
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	128, 211
BstC8I	GCNNGC	2 cut(s)	175, 212
BstDEI	CTNAG	5 cut(s)	106, 196, 323, 453, 646
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	2 cut(s)	24, 450
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	21, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 211
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	95, 408, 582
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	175, 212
Cfr13I	GGNCC	2 cut(s)	406, 580
CviAII	CATG	4 cut(s)	184, 350, 542, 548
DdeI	CTNAG	5 cut(s)	106, 196, 323, 453, 646
DpnI	GATC	2 cut(s)	23, 449
DpnII	GATC	2 cut(s)	21, 447
Eam1104I	CTCTTC	2 cut(s)	70, 151
EarI	CTCTTC	2 cut(s)	70, 151
Ecl136II	GAGCTC	2 cut(s)	103, 645
Eco24I	GRGCYC	2 cut(s)	105, 647
Eco53kI	GAGCTC	2 cut(s)	103, 645
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	2 cut(s)	103, 645
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	2 cut(s)	105, 647
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	4 cut(s)	187, 353, 545, 551
FaiI	YATR	7 cut(s)	171, 185, 351, 440, 543, 549, 639
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	4 cut(s)	183, 349, 541, 547
Fnu4HI	GCNGC	2 cut(s)	306, 409
FriOI	GRGCYC	2 cut(s)	105, 647
Fsp4HI	GCNGC	2 cut(s)	306, 409
FspBI	CTAG	3 cut(s)	174, 236, 263
GluI	GCNGC	2 cut(s)	306, 409
GsuI	CTGGAG	2 cut(s)	268, 401
HaeIII	GGCC	3 cut(s)	95, 408, 582
Hin1II	CATG	4 cut(s)	187, 353, 545, 551
HinfI	GANTC	4 cut(s)	16, 395, 554, 593
HphI	GGTGA	2 cut(s)	67, 440
Hpy188I	TCNGA	5 cut(s)	21, 462, 559, 592, 649
Hpy188III	TCNNGA	6 cut(s)	8, 25, 227, 251, 399, 632
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4IV	ACGT	2 cut(s)	59, 653
HpyCH4V	TGCA	3 cut(s)	122, 214, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 211
HpyF3I	CTNAG	5 cut(s)	106, 196, 323, 453, 646
HpySE526I	ACGT	2 cut(s)	59, 653
Hsp92II	CATG	4 cut(s)	187, 353, 545, 551
Kzo9I	GATC	2 cut(s)	21, 447
LmnI	GCTCC	2 cut(s)	100, 631
LpnPI	CCDG	9 cut(s)	38, 271, 298, 365, 384, 488, 550, 596, 666
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	174, 236, 263
MaeII	ACGT	2 cut(s)	59, 653
MaeIII	GTNAC	4 cut(s)	55, 255, 598, 611
MalI	GATC	2 cut(s)	23, 449
MboI	GATC	2 cut(s)	21, 447
MboII	GAAGA	9 cut(s)	25, 40, 84, 87, 100, 133, 138, 353, 377
MhlI	GDGCHC	2 cut(s)	105, 647
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	602
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	356, 500
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	128, 211
NdeII	GATC	2 cut(s)	21, 447
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	187, 353, 545, 551
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	16, 395, 554
PkrI	GCNGC	2 cut(s)	307, 410
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	2 cut(s)	105, 647
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	406, 580
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	2 cut(s)	105, 647
SaqAI	TTAA	2 cut(s)	356, 500
SatI	GCNGC	2 cut(s)	306, 409
Sau3AI	GATC	2 cut(s)	21, 447
Sau96I	GGNCC	2 cut(s)	406, 580
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	105, 647
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	5 cut(s)	178, 251, 499, 630, 659
SmoI	CTYRAG	5 cut(s)	178, 251, 499, 630, 659
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	3 cut(s)	208, 409, 572
SspMI	CTAG	3 cut(s)	174, 236, 263
SstI	GAGCTC	2 cut(s)	105, 647
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	62, 656
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	359
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	16, 395, 554
Tru1I	TTAA	2 cut(s)	356, 500
Tru9I	TTAA	2 cut(s)	356, 500
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	200, 338, 455, 507, 536
TspGWI	ACGGA	2 cut(s)	550, 586
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	499
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	174, 236, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.