Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Reverse (-)

31619578 .. 31624356

Gene Structure 4779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1313200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGAGGGAGAAGATTCAGATCAAGAAGATCGACAACGCGACAGCGAGGCAGGTGACCTTTTCCAAGAGGAGAAGAGGCCTTTTCAAGAAGGCTGAGGAGCTCTCCGTTCTCTGTGATGCCGATATTGCTCTTATCATATTTTCTTCCACCGGAAAGCTCTTTGAATACGCCAGCTCTAGTATGAAGGAAATTCTAGAAAGGCACAACTTGCATTCAAAGAATCTCGACAAACTAGAACAACCATCTCTTGAGTTACAGCTAGTGGAGAACAGCAACTACTCCAGGTTGAGCAAGGAAATTGCAGCAAAAAGTCATCAACTTAGGCAGATGAGAGGAGAAGAAATTCAAGGACTAAGTTTGGAAGAACTGCAACAATTGGAGAAGTCCCTTGAAGCTGGCTTGGGTGGCGTAGTAGAGAAAAAGAGTGAAAAGATTATGAAAGAGATCAACGATCTTCAAAGAAATGCGATGCAATTGACGGAAGAGAATGAACGATTAAGACAGCAAGTGGTGGAGAAATCTAATGGCCGTAGGCTTGTTCATGTCGATTCAGAGAACCTGATTACGGAGGAGGGTCAGTCATCAGAGTCTGTCACCAATCTCTGTAAATCTAACAGCGGTCCTCAAGACTATGACAACTCAGTTACATCTCTAAAATTGGGGCTGCCTTTCTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

228

Amino Acids

25.68

Weight (kDa)

6.48

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	1.6e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	192, 345
AfiI	CCNNNNNNNGG	2 cut(s)	568, 677
AgsI	TTSAA	6 cut(s)	88, 167, 219, 350, 395, 461
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	5 cut(s)	103, 160, 177, 262, 398
AluI	AGCT	5 cut(s)	103, 160, 177, 262, 398
Alw21I	GWGCWC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	2 cut(s)	79, 529
ApeKI	GCWGC	2 cut(s)	305, 667
ApoI	RAATTY	2 cut(s)	192, 345
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	67, 589
AvaII	GGWCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	317, 654
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	4 cut(s)	180, 197, 236, 263
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	306, 668
BlsI	GCNGC	2 cut(s)	307, 669
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	623
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	109, 462
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	272, 612
BsaBI	GATNNNNATC	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 677
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	568, 677
BseMII	CTCAG	2 cut(s)	87, 657
BseRI	GAGGAG	4 cut(s)	85, 113, 351, 587
BseXI	GCAGC	2 cut(s)	317, 654
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	81, 531
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	568, 677
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	81, 531
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	21, 30, 447, 454
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	2 cut(s)	81, 531
BspCNI	CTCAG	2 cut(s)	88, 656
BspFNI	CGCG	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	43
BssMI	GATC	4 cut(s)	21, 30, 447, 454
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	70, 480
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	175, 400
BstDEI	CTNAG	4 cut(s)	96, 323, 356, 643
BstEII	GGTNACC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	24, 33, 450, 457
BstMBI	GATC	4 cut(s)	21, 30, 447, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
BstNI	CCWGG	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	317, 654
BsuRI	GGCC	2 cut(s)	81, 531
BtgZI	GCGATG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	175, 400
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	623
CviAII	CATG	1 cut(s)	545
DdeI	CTNAG	4 cut(s)	96, 323, 356, 643
DpnI	GATC	4 cut(s)	23, 32, 449, 456
DpnII	GATC	4 cut(s)	21, 30, 447, 454
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	70, 480
EarI	CTCTTC	2 cut(s)	70, 480
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	548
FaiI	YATR	5 cut(s)	140, 185, 440, 546, 636
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	306, 668
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	306, 668
FspBI	CTAG	4 cut(s)	180, 197, 236, 263
GluI	GCNGC	2 cut(s)	306, 668
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	81, 531
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	548
HinfI	GANTC	4 cut(s)	16, 223, 551, 590
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	67, 589
Hpy188I	TCNGA	3 cut(s)	21, 556, 589
Hpy188III	TCNNGA	6 cut(s)	25, 88, 197, 227, 251, 629
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4V	TGCA	4 cut(s)	214, 305, 373, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
HpyF3I	CTNAG	4 cut(s)	96, 323, 356, 643
Hsp92II	CATG	1 cut(s)	548
Kzo9I	GATC	4 cut(s)	21, 30, 447, 454
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	38, 166, 187, 271, 298, 384, 575, 663
Lsp1109I	GCAGC	2 cut(s)	317, 654
LweI	GCATC	2 cut(s)	109, 462
MaeI	CTAG	4 cut(s)	180, 197, 236, 263
MaeIII	GTNAC	4 cut(s)	55, 255, 595, 646
MalI	GATC	4 cut(s)	23, 32, 449, 456
MboI	GATC	4 cut(s)	21, 30, 447, 454
MboII	GAAGA	8 cut(s)	25, 40, 87, 138, 353, 377, 449, 497
MfeI	CAATTG	2 cut(s)	377, 476
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	6 cut(s)	192, 300, 345, 377, 476, 659
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	8 cut(s)	42, 63, 71, 91, 329, 565, 568, 636
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	621
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	2 cut(s)	377, 476
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
NdeII	GATC	4 cut(s)	21, 30, 447, 454
NlaIII	CATG	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	55, 595
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	81
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	16, 223, 551
PkrI	GCNGC	2 cut(s)	307, 669
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	623
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PstNI	CAGNNNCTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	2 cut(s)	306, 668
Sau3AI	GATC	4 cut(s)	21, 30, 447, 454
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	9 cut(s)	57, 62, 105, 162, 179, 264, 290, 400, 564
SfaNI	GCATC	2 cut(s)	109, 462
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	251, 627
SmoI	CTYRAG	2 cut(s)	251, 627
Sse9I	AATT	6 cut(s)	192, 300, 345, 377, 476, 659
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	621
SspMI	CTAG	4 cut(s)	180, 197, 236, 263
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	284
TaqI	TCGA	3 cut(s)	33, 228, 549
TasI	AATT	6 cut(s)	192, 300, 345, 377, 476, 659
TfiI	GAWTC	3 cut(s)	16, 223, 551
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	55, 595
TseI	GCWGC	2 cut(s)	305, 667
Tsp45I	GTSAC	2 cut(s)	55, 595
TspDTI	ATGAA	4 cut(s)	200, 455, 507, 533
TspGWI	ACGGA	3 cut(s)	97, 497, 584
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	192, 345
XbaI	TCTAGA	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	4 cut(s)	180, 197, 236, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.