Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Forward (+)

13395897 .. 13410209

Gene Structure 14313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1038600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGAGGGAGAAAATTCAGATCAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACCTTTTCCAAGAGGAGAAGAGGCCTTTTGAAGAAGGCCGAGGAGCTCTCCGTTCTCTGCGATGCCGATATTGCTCTTATCATATTTTCTTCCACCGGAAAGCTCTTTGAATACGCCAGCTCTAGTATGAAGGAAATTCTAGAAAGGCACAACTTGCATTCAAAGAATCTCGAGAAACTAGAACAACCATCTCTTCAGCTACAGCTAGTGGAGAACAGCAACTACACCAGGTTGAGCAAGGAAATTGCAGCAAAAAGTCATCAACTTAGGCAGATGAGAGGAGAAGAAATTCAAGGACTAAATTTGGAAGAACTCCAACAATTGGAGAAGTCACTTGAAACTGGCTTGGGCCGCGTAATAGAGAAAAAGAGTGAAAAAATCATGAAAGAGATCGGTGATCTTCAAAGAAATGGGATGCAATTGATGGAAGAGAATGAACGATTAAGACAGCAAGTGGCGGAGAAATCTGATGGCCGGAGGCTTGTTCAGGTCGATTCAGAGAACATGTTTACGGAGGAGGGTCAATCATCAGAGTCTGTCACCAATCCCTGTAACTCAAACAACGGTCCTCAAGACTACGACAGCTCAGATACATCTCTAAAATTGGGGCTGCCTTACTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

228

Amino Acids

25.82

Weight (kDa)

6.06

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	1.3e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	1 cut(s)	411
AciI	CCGC	2 cut(s)	409, 515
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	4 cut(s)	15, 192, 345, 358
AcuI	CTGAAG	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	48, 379, 677
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	6 cut(s)	88, 167, 219, 350, 395, 461
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	6 cut(s)	103, 160, 177, 256, 262, 642
AluI	AGCT	6 cut(s)	103, 160, 177, 256, 262, 642
Alw21I	GWGCWC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	4 cut(s)	79, 93, 406, 529
ApeKI	GCWGC	2 cut(s)	305, 667
ApoI	RAATTY	4 cut(s)	15, 192, 345, 358
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	406, 623
AsuHPI	GGTGA	3 cut(s)	67, 464, 589
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	317, 654
BccI	CCATC	3 cut(s)	253, 475, 521
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	4 cut(s)	180, 197, 236, 263
BfmI	CTRYAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	306, 409, 668
BlsI	GCNGC	3 cut(s)	307, 410, 669
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	406, 623
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	109, 462
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuEI	CTTGAG	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	42, 96
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 379, 677
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	42, 96
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	48, 379, 677
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	4 cut(s)	85, 113, 351, 587
BseXI	GCAGC	2 cut(s)	317, 654
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	81, 95, 408, 531
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	153, 532
BslI	CCNNNNNNNGG	3 cut(s)	48, 379, 677
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	81, 95, 408, 531
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	21, 30, 447, 454
BspACI	CCGC	2 cut(s)	409, 515
BspANI	GGCC	4 cut(s)	81, 95, 408, 531
BspCNI	CTCAG	1 cut(s)	656
BspFNI	CGCG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	42, 96
BssMI	GATC	4 cut(s)	21, 30, 447, 454
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	3 cut(s)	70, 255, 480
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	323, 643
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	4 cut(s)	24, 33, 450, 457
BstMBI	GATC	4 cut(s)	21, 30, 447, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	257
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	317, 654
BsuRI	GGCC	4 cut(s)	81, 95, 408, 531
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	406, 623
CsiI	ACCWGGT	1 cut(s)	284
CviAII	CATG	2 cut(s)	439, 562
DdeI	CTNAG	2 cut(s)	323, 643
DpnI	GATC	4 cut(s)	23, 32, 449, 456
DpnII	GATC	4 cut(s)	21, 30, 447, 454
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	3 cut(s)	70, 255, 480
EarI	CTCTTC	3 cut(s)	70, 255, 480
EciI	GGCGGA	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	442, 565
FaiI	YATR	4 cut(s)	140, 185, 440, 563
FatI	CATG	2 cut(s)	438, 561
Fnu4HI	GCNGC	3 cut(s)	306, 409, 668
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	306, 409, 668
FspBI	CTAG	4 cut(s)	180, 197, 236, 263
GluI	GCNGC	3 cut(s)	306, 409, 668
HaeIII	GGCC	4 cut(s)	81, 95, 408, 531
HapII	CCGG	2 cut(s)	153, 532
Hin1II	CATG	2 cut(s)	442, 565
HinfI	GANTC	3 cut(s)	223, 551, 590
HpaII	CCGG	2 cut(s)	153, 532
HphI	GGTGA	3 cut(s)	67, 464, 589
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	5 cut(s)	21, 526, 556, 589, 646
Hpy188III	TCNNGA	6 cut(s)	25, 197, 227, 229, 439, 629
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	3 cut(s)	214, 305, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
HpyF3I	CTNAG	2 cut(s)	323, 643
Hsp92II	CATG	2 cut(s)	442, 565
Kzo9I	GATC	4 cut(s)	21, 30, 447, 454
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	317, 654
LweI	GCATC	2 cut(s)	109, 462
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	4 cut(s)	180, 197, 236, 263
MaeIII	GTNAC	4 cut(s)	55, 387, 595, 608
MalI	GATC	4 cut(s)	23, 32, 449, 456
MboI	GATC	4 cut(s)	21, 30, 447, 454
MboII	GAAGA	9 cut(s)	40, 87, 100, 138, 242, 353, 377, 449, 497
MfeI	CAATTG	2 cut(s)	377, 476
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	8 cut(s)	15, 192, 300, 345, 358, 377, 476, 659
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	9 cut(s)	42, 63, 71, 91, 329, 528, 565, 568, 636
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	500
MspI	CCGG	2 cut(s)	153, 532
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	2 cut(s)	377, 476
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	128, 211, 408
NdeII	GATC	4 cut(s)	21, 30, 447, 454
NlaIII	CATG	2 cut(s)	442, 565
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	55, 387, 595
NspI	RCATGY	1 cut(s)	565
PaeR7I	CTCGAG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	81
PciI	ACATGT	1 cut(s)	561
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	223, 551
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	307, 410, 669
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	406, 623
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PstNI	CAGNNNCTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	3 cut(s)	306, 409, 668
Sau3AI	GATC	4 cut(s)	21, 30, 447, 454
Sau96I	GGNCC	2 cut(s)	406, 623
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	2 cut(s)	109, 462
SfcI	CTRYAG	1 cut(s)	257
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	227, 627
SmoI	CTYRAG	2 cut(s)	227, 627
Sse9I	AATT	8 cut(s)	15, 192, 300, 345, 358, 377, 476, 659
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	409, 515
SspMI	CTAG	4 cut(s)	180, 197, 236, 263
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	3 cut(s)	33, 228, 549
TasI	AATT	8 cut(s)	15, 192, 300, 345, 358, 377, 476, 659
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	223, 551
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TseFI	GTSAC	3 cut(s)	55, 387, 595
TseI	GCWGC	2 cut(s)	305, 667
Tsp45I	GTSAC	3 cut(s)	55, 387, 595
TspDTI	ATGAA	3 cut(s)	200, 455, 507
TspGWI	ACGGA	2 cut(s)	97, 584
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	4 cut(s)	15, 192, 345, 358
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	4 cut(s)	180, 197, 236, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.