Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Forward (+)

20565101 .. 20570023

Gene Structure 4923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G199000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGAGGGAGAAGATTCAGATCAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACCTTTTCCAAGCGGAGGAGAGGGCTTTTCAAGAAGGCTCAGGAGCTCTCCGTTCTCTGTGATGCAGATATTGCTCTTATCATCTTTTCTTCCACTGGAAAGCTCTTTGAATACGCCAGCTCCAGCATGAAGGAAATTCTAGAACGTCACAACTTGCACGCAAAGAATCTCTCGAAAATAGAACAACCATCTCTTGAGTTACAGCTAGTGGAGAACAGTAACTACTCTGCGTTGAGCAAGGAAATTACAGCACAAAGTCAACAACTTAGGCAGATAAGGGGAGAAGAAATCCAGGGATTAAATTTGGAAGAATTGCAGCAACTGGAGAAGTCTCTTGAAGCTGGATTGGGCCGCGTAATAGAGAAAAAGGGTGAAAAGATTATGAAAGAGATCAGCGATCTCGAAAGCAATGCGATGCGATTGGTTGAAGAGAATGAACGGCTGAGACAGCAAGTGCTGGAGAAACATAATAGCCAGAAGCCGGTTCGGGCCGATTCAGAAAACATAGTTATGGAGGAGGGTCAGTCATCAGAGTCTGTCACCACCAACCTCTGCAACTCTAACAGCGCTCCTCAAGACTATGAGAGCTCAGATACGTCTCTCAAATTGGGGTTACCTTACTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

5.81

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	411
AciI	CCGC	2 cut(s)	70, 409
AcsI	RAATTY	2 cut(s)	192, 358
AfeI	AGCGCT	1 cut(s)	625
AfiI	CCNNNNNNNGG	4 cut(s)	48, 72, 538, 680
AgsI	TTSAA	4 cut(s)	88, 167, 395, 485
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	6 cut(s)	103, 160, 177, 262, 398, 645
AluI	AGCT	6 cut(s)	103, 160, 177, 262, 398, 645
Alw21I	GWGCWC	2 cut(s)	105, 647
Alw26I	GTCTC	3 cut(s)	393, 496, 660
AlwNI	CAGNNNCTG	2 cut(s)	379, 593
Aor51HI	AGCGCT	1 cut(s)	625
AoxI	GGCC	2 cut(s)	406, 546
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	192, 358
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	406, 546
AsuHPI	GGTGA	3 cut(s)	67, 440, 589
BanII	GRGCYC	2 cut(s)	105, 647
Bbv12I	GWGCWC	2 cut(s)	105, 647
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	60, 512
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	393, 496, 660
BfaI	CTAG	2 cut(s)	197, 263
BfoI	RGCGCY	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	374, 409
BlsI	GCNGC	2 cut(s)	375, 410
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	406, 546
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	109, 462
BpmI	CTGGAG	3 cut(s)	163, 401, 536
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	272, 615
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	42, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 566, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 72, 538, 680
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	157, 384
Bse3DI	GCAATG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	42, 349
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	4 cut(s)	48, 72, 538, 680
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	3 cut(s)	110, 491, 660
BseNI	ACTGG	2 cut(s)	157, 384
BseRI	GAGGAG	3 cut(s)	88, 587, 618
BseXI	GCAGC	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	408, 548
BsiHKAI	GWGCWC	2 cut(s)	105, 647
BsiSI	CCGG	1 cut(s)	539
BslI	CCNNNNNNNGG	4 cut(s)	48, 72, 538, 680
BsmAI	GTCTC	3 cut(s)	393, 496, 660
BsmBI	CGTCTC	1 cut(s)	660
BsnI	GGCC	2 cut(s)	408, 548
Bsp1286I	GDGCHC	2 cut(s)	105, 647
Bsp143I	GATC	4 cut(s)	21, 30, 447, 454
BspACI	CCGC	2 cut(s)	70, 409
BspANI	GGCC	2 cut(s)	408, 548
BspCNI	CTCAG	3 cut(s)	109, 492, 659
BspFNI	CGCG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	157, 384
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	42, 349
BssMI	GATC	4 cut(s)	21, 30, 447, 454
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	175, 216
BstDEI	CTNAG	4 cut(s)	96, 323, 500, 646
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	2 cut(s)	55, 669
BstFNI	CGCG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	4 cut(s)	24, 33, 450, 457
BstMAI	GTCTC	3 cut(s)	393, 496, 660
BstMBI	GATC	4 cut(s)	21, 30, 447, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 505
BstNI	CCWGG	1 cut(s)	350
BstPI	GGTNACC	2 cut(s)	55, 669
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	408, 548
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	175, 216
CaiI	CAGNNNCTG	2 cut(s)	379, 593
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	406, 546
CviAII	CATG	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	96, 323, 500, 646
DpnI	GATC	4 cut(s)	23, 32, 449, 456
DpnII	GATC	4 cut(s)	21, 30, 447, 454
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	2 cut(s)	103, 645
Eco24I	GRGCYC	2 cut(s)	105, 647
Eco47III	AGCGCT	1 cut(s)	625
Eco53kI	GAGCTC	2 cut(s)	103, 645
Eco91I	GGTNACC	2 cut(s)	55, 669
EcoICRI	GAGCTC	2 cut(s)	103, 645
EcoO65I	GGTNACC	2 cut(s)	55, 669
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	105, 647
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	1 cut(s)	187
FaiI	YATR	6 cut(s)	185, 440, 525, 563, 569, 639
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	374, 409
FriOI	GRGCYC	2 cut(s)	105, 647
Fsp4HI	GCNGC	2 cut(s)	374, 409
FspBI	CTAG	2 cut(s)	197, 263
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	2 cut(s)	374, 409
GsuI	CTGGAG	3 cut(s)	163, 401, 536
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	408, 548
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	4 cut(s)	16, 223, 551, 590
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	3 cut(s)	67, 440, 589
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	21, 556, 589, 649
Hpy188III	TCNNGA	9 cut(s)	25, 88, 98, 197, 229, 251, 392, 458, 632
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	202, 653
HpyCH4V	TGCA	4 cut(s)	122, 214, 373, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 505
HpyF3I	CTNAG	4 cut(s)	96, 323, 500, 646
HpySE526I	ACGT	2 cut(s)	202, 653
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	21, 30, 447, 454
LmnI	GCTCC	3 cut(s)	100, 182, 631
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	109, 462
MaeI	CTAG	2 cut(s)	197, 263
MaeII	ACGT	2 cut(s)	202, 653
MaeIII	GTNAC	6 cut(s)	55, 203, 255, 275, 595, 669
MalI	GATC	4 cut(s)	23, 32, 449, 456
MboI	GATC	4 cut(s)	21, 30, 447, 454
MboII	GAAGA	6 cut(s)	25, 40, 138, 353, 377, 497
MhlI	GDGCHC	2 cut(s)	105, 647
MluCI	AATT	5 cut(s)	192, 300, 358, 368, 662
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	7 cut(s)	42, 66, 71, 565, 568, 617, 639
MseI	TTAA	2 cut(s)	356, 685
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	128, 505
NdeII	GATC	4 cut(s)	21, 30, 447, 454
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	55, 203, 595
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	16, 223, 551
PkrI	GCNGC	2 cut(s)	375, 410
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	2 cut(s)	105, 647
Psp6I	CCWGG	1 cut(s)	348
PspEI	GGTNACC	2 cut(s)	55, 669
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	406, 546
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PstNI	CAGNNNCTG	2 cut(s)	379, 593
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	2 cut(s)	105, 647
SaqAI	TTAA	2 cut(s)	356, 685
SatI	GCNGC	2 cut(s)	374, 409
Sau3AI	GATC	4 cut(s)	21, 30, 447, 454
Sau96I	GGNCC	2 cut(s)	406, 546
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	105, 647
SfaNI	GCATC	2 cut(s)	109, 462
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	251, 630
SmoI	CTYRAG	2 cut(s)	251, 630
Sse9I	AATT	5 cut(s)	192, 300, 358, 368, 662
SsiI	CCGC	2 cut(s)	70, 409
SspMI	CTAG	2 cut(s)	197, 263
SstI	GAGCTC	2 cut(s)	105, 647
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	2 cut(s)	205, 656
TaqI	TCGA	3 cut(s)	33, 230, 459
TasI	AATT	5 cut(s)	192, 300, 358, 368, 662
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	16, 223, 551
Tru1I	TTAA	2 cut(s)	356, 685
Tru9I	TTAA	2 cut(s)	356, 685
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	3 cut(s)	55, 203, 595
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	3 cut(s)	55, 203, 595
TspDTI	ATGAA	3 cut(s)	200, 455, 507
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	192, 358
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	2 cut(s)	197, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.