Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Reverse (-)

11923852 .. 11928536

Gene Structure 4685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCGGGAGAAGATTCAGATCAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTTTCAAAGAGGAGAAGAGGGCTTTTGAAGAAGGCTGAGGAGCTCTCAGTTCTCTGTGATGCAGATATTGCTCTTATCATCTTCTCTTCAACTGGAAAGCTCTTTGAATATGCTAGCTCAAGCATGAAGGAAATCTTAGAAAGGCACCACTTGCACTCCAAAAATCTTGACAAACTAGAGCAACCATCTCTTGAGTTACAGCTAGTGGAGAACAGCAACTACTCCAGGTTGAGCAAGGAAATAACAGCAAAAAGCCATCAACTGAGGCAGATGAGGGGAGAAGAACTTCATGGATTAAATTTGGAAGAACTGCAACAGCTGGAGAAGTCCCTCGAGTCTGGAATGGGCCGTGTGATCGAGAAAAAGGGGGAAAAGATTATGAAAGAGATCACCGACCTTCAAAGAAATGCCATTCAGTTGATTGAAGAGAACGAACGATTAAAACAACAAGTGGTGGAAAGAACGGATGGTGGACGGAGGCATGTTCATGCTGATTCAGATAACAGGTTTACGGAGGAGGGTCAGTCATCAGAGTCTGTAACCAATCTCTGCAACTCTAATAATTCTCCTCAAGACTATGACAGCTCAGATACGTCTCTCAAGTTGGGGCTACCATATTCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

26.01

Weight (kDa)

6.41

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	8.2e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	48, 680
AgsI	TTSAA	6 cut(s)	66, 88, 150, 167, 461, 485
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	6 cut(s)	103, 160, 177, 262, 379, 645
AluI	AGCT	6 cut(s)	103, 160, 177, 262, 379, 645
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	2 cut(s)	6, 392
AoxI	GGCC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	67, 442
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	2 cut(s)	6, 392
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	96
BccI	CCATC	3 cut(s)	253, 324, 521
BceAI	ACGGC	2 cut(s)	60, 393
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	3 cut(s)	174, 236, 263
BfuAI	ACCTGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	286
BmeT110I	CYCGRG	2 cut(s)	6, 392
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	2 cut(s)	268, 401
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	4 cut(s)	163, 272, 615, 644
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 680
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	48, 680
BseMII	CTCAG	4 cut(s)	87, 120, 314, 660
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	4 cut(s)	85, 113, 590, 618
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	6, 392
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	48, 680
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	2 cut(s)	6, 392
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	21, 30, 414, 447
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	4 cut(s)	88, 119, 315, 659
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	4 cut(s)	21, 30, 414, 447
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	70, 151, 480
BstAPI	GCANNNNNTGC	2 cut(s)	128, 211
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	96, 106, 196, 323, 646
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	4 cut(s)	24, 33, 417, 450
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	21, 30, 414, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 211
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	532
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	406
CviAII	CATG	4 cut(s)	184, 350, 542, 548
DdeI	CTNAG	5 cut(s)	96, 106, 196, 323, 646
DpnI	GATC	4 cut(s)	23, 32, 416, 449
DpnII	GATC	4 cut(s)	21, 30, 414, 447
Eam1104I	CTCTTC	3 cut(s)	70, 151, 480
EarI	CTCTTC	3 cut(s)	70, 151, 480
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	2 cut(s)	6, 392
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	4 cut(s)	187, 353, 545, 551
FaiI	YATR	8 cut(s)	171, 185, 351, 440, 543, 549, 639, 676
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	4 cut(s)	183, 349, 541, 547
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	3 cut(s)	174, 236, 263
GsuI	CTGGAG	2 cut(s)	268, 401
HaeIII	GGCC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	187, 353, 545, 551
HinfI	GANTC	4 cut(s)	16, 395, 554, 593
HphI	GGTGA	2 cut(s)	67, 442
Hpy166II	GTNNAC	2 cut(s)	533, 570
Hpy188I	TCNGA	4 cut(s)	21, 559, 592, 649
Hpy188III	TCNNGA	7 cut(s)	8, 25, 227, 251, 399, 418, 632
Hpy8I	GTNNAC	2 cut(s)	533, 570
HpyAV	CCTTC	3 cut(s)	85, 181, 467
HpyCH4IV	ACGT	2 cut(s)	59, 653
HpyCH4V	TGCA	4 cut(s)	122, 214, 373, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 211
HpyF3I	CTNAG	5 cut(s)	96, 106, 196, 323, 646
HpySE526I	ACGT	2 cut(s)	59, 653
Hsp92II	CATG	4 cut(s)	187, 353, 545, 551
Kzo9I	GATC	4 cut(s)	21, 30, 414, 447
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	38, 138, 271, 298, 365, 384, 550, 666
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	174, 236, 263
MaeII	ACGT	2 cut(s)	59, 653
MaeIII	GTNAC	3 cut(s)	55, 255, 598
MalI	GATC	4 cut(s)	23, 32, 416, 449
MboI	GATC	4 cut(s)	21, 30, 414, 447
MboII	GAAGA	9 cut(s)	25, 40, 87, 100, 133, 138, 353, 377, 497
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	358, 622
MlyI	GAGTC	2 cut(s)	404, 602
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	356, 500
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	128, 211
NdeII	GATC	4 cut(s)	21, 30, 414, 447
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	187, 353, 545, 551
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	16, 554
PflMI	CCANNNNNTGG	1 cut(s)	680
PleI	GAGTC	2 cut(s)	403, 601
PpsI	GAGTC	2 cut(s)	403, 601
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	406
PspXI	VCTCGAGB	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PstNI	CAGNNNCTG	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	356, 500
Sau3AI	GATC	4 cut(s)	21, 30, 414, 447
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	404, 602
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	5 cut(s)	178, 251, 392, 630, 659
SmoI	CTYRAG	5 cut(s)	178, 251, 392, 630, 659
Sse9I	AATT	2 cut(s)	358, 622
SspMI	CTAG	3 cut(s)	174, 236, 263
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	62, 656
TaqI	TCGA	3 cut(s)	33, 393, 417
TasI	AATT	2 cut(s)	358, 622
TfiI	GAWTC	2 cut(s)	16, 554
Tru1I	TTAA	2 cut(s)	356, 500
Tru9I	TTAA	2 cut(s)	356, 500
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	200, 338, 455, 536
TspGWI	ACGGA	3 cut(s)	539, 550, 587
Van91I	CCANNNNNTGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	174, 236, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.