Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Reverse (-)

21455654 .. 21459487

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCGGGAGAAGATTCAGATCAAGAAGATTGACAACGCCACAGCGAGGCAGGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTGAAGAAGGCCGAGGAGCTCTCAGTTCTCTGTGATGCAGATATTGCTCTTATTATCTTCTCTTCTACGGGAAAGCTCTTTGAATATGCTAGCTCAAGCATGAAGGAAATCTTAGAAAGGCACCGCTTGCACTCCAAAAATCTCGACAAACTAGAACAGCCCTCTCTTGAGTTACAGCTAGTGGAGAACAGCAACTACGCCAGGTTGAGCAAGGAAATAGCAGCAAAAAGCCATCAACTTAGGCAGATGAGGGGAGAAGAACTTCATGGATTAAAATTGGAAGAACTCCAACAGCTGGAGAACTCACTTGAATCTGGATTGGGCCGCGTGATTGAGAAAAAGGGTGAAAAGATTATGAAAGAGATCACTGAGCTTCAGAAAAATGCCGTCCAGTTGATTGAGGAGAATGAACGCTTAAGACAGCAAGTGATGGAAAGAACTGATGGCAGACGGAGGCATGCTGATTCAGAGAACAGGATTACGGAGGAGGGCCAGTCATCAGAGTCCGTAACCAATCTCTGTAACTCTAATAATGCTCCTCAAGACTATGACAGCTCAGATACGTCTCTCAAGTTGGGGCTACCTTATTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

226

Amino Acids

25.82

Weight (kDa)

6.99

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.5e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	9.5e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	1 cut(s)	411
AciI	CCGC	2 cut(s)	208, 409
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	48, 379, 674
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	66, 88, 167, 395
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 639
AluI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 639
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	654
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	93, 406, 574
ApeKI	GCWGC	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	406, 574
AsuHPI	GGTGA	2 cut(s)	67, 440
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	3 cut(s)	324, 508, 521
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	3 cut(s)	174, 236, 263
BfrI	CTTAAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	306, 409
BlsI	GCNGC	2 cut(s)	307, 410
Bme1390I	CCNGG	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	406, 574
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	4 cut(s)	163, 272, 609, 638
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 379, 674
Bse1I	ACTGG	2 cut(s)	475, 577
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	48, 379, 674
BseMII	CTCAG	3 cut(s)	120, 444, 654
BseNI	ACTGG	2 cut(s)	475, 577
BseRI	GAGGAG	4 cut(s)	113, 500, 584, 612
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	95, 408, 576
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	48, 379, 674
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsnI	GGCC	3 cut(s)	95, 408, 576
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	21, 447
BspACI	CCGC	2 cut(s)	208, 409
BspANI	GGCC	3 cut(s)	95, 408, 576
BspCNI	CTCAG	3 cut(s)	119, 445, 653
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	475, 577
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	21, 447
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	70, 151
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	128, 211
BstC8I	GCNNGC	3 cut(s)	175, 212, 543
BstDEI	CTNAG	5 cut(s)	106, 196, 323, 453, 640
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	2 cut(s)	24, 450
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	2 cut(s)	21, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 211
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	95, 408, 576
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	175, 212, 543
Cfr13I	GGNCC	2 cut(s)	406, 574
CviAII	CATG	3 cut(s)	184, 350, 542
DdeI	CTNAG	5 cut(s)	106, 196, 323, 453, 640
DpnI	GATC	2 cut(s)	23, 449
DpnII	GATC	2 cut(s)	21, 447
Eam1104I	CTCTTC	2 cut(s)	70, 151
EarI	CTCTTC	2 cut(s)	70, 151
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	3 cut(s)	187, 353, 545
FaiI	YATR	6 cut(s)	171, 185, 351, 440, 543, 633
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	3 cut(s)	183, 349, 541
Fnu4HI	GCNGC	2 cut(s)	306, 409
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	306, 409
FspBI	CTAG	3 cut(s)	174, 236, 263
GluI	GCNGC	2 cut(s)	306, 409
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	95, 408, 576
Hin1II	CATG	3 cut(s)	187, 353, 545
HinfI	GANTC	4 cut(s)	16, 395, 548, 587
HphI	GGTGA	2 cut(s)	67, 440
Hpy188I	TCNGA	5 cut(s)	21, 462, 553, 586, 643
Hpy188III	TCNNGA	6 cut(s)	8, 25, 227, 251, 399, 626
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4IV	ACGT	2 cut(s)	59, 647
HpyCH4V	TGCA	2 cut(s)	122, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 211
HpyF3I	CTNAG	5 cut(s)	106, 196, 323, 453, 640
HpySE526I	ACGT	2 cut(s)	59, 647
Hsp92II	CATG	3 cut(s)	187, 353, 545
Kzo9I	GATC	2 cut(s)	21, 447
LmnI	GCTCC	2 cut(s)	100, 625
LpnPI	CCDG	9 cut(s)	38, 271, 298, 365, 384, 488, 544, 590, 660
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	174, 236, 263
MaeII	ACGT	2 cut(s)	59, 647
MaeIII	GTNAC	4 cut(s)	55, 255, 592, 605
MalI	GATC	2 cut(s)	23, 449
MboI	GATC	2 cut(s)	21, 447
MboII	GAAGA	9 cut(s)	25, 40, 84, 87, 100, 133, 138, 353, 377
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	356, 500
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	128, 211
NdeII	GATC	2 cut(s)	21, 447
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	187, 353, 545
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	16, 395, 548
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	307, 410
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	406, 574
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PvuII	CAGCTG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	356, 500
SatI	GCNGC	2 cut(s)	306, 409
Sau3AI	GATC	2 cut(s)	21, 447
Sau96I	GGNCC	2 cut(s)	406, 574
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	5 cut(s)	178, 251, 499, 624, 653
SmoI	CTYRAG	5 cut(s)	178, 251, 499, 624, 653
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	208, 409
SspMI	CTAG	3 cut(s)	174, 236, 263
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	62, 650
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	359
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	16, 395, 548
Tru1I	TTAA	2 cut(s)	356, 500
Tru9I	TTAA	2 cut(s)	356, 500
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	200, 338, 455, 507
TspGWI	ACGGA	3 cut(s)	550, 580, 581
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	499
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	174, 236, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.