Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009755

Physical Location & Seq

Genomic Coordinates Forward (+)

9618207 .. 9622163

Gene Structure 3957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGAGAGGGAAGATTGTGATCCAGAAGATCGATGATTCCACGAGTAGACAAGTCACTTTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTTGCTATTCTCTGCGACGCCGAGGTCTGTCTCATCATTTTCTCCAACACTGACAAGCTCTATGACTTTGCCAGCTCCAGTGTGAAATCTACTATTGAACGATTCAATACGGCTAAGATGGAGGAGCAAGAACTAATGAACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTGCACTCATTGCAAGAAAATTATCGGCAACTAACGGGAGTGGAATTAAATGGTTTGAGCGTTAAGGAGTTACAAAACATAGAGAGTCAACTTGAAATGAGTTTACGTGGAATTCGTATGAAAAGGGAACAAATTTTGACCAATGAAATTAAAGAGCTAACCAGAAAGAGGAATCTTGTTCATCATGAAAACCTCGAATTGTCGAGAAAAGTACAAAGGATTCATCAAGAAAATGTCGAACTATACAAGAAGGCTTATGGAACGTCGAACACAAATGGATTGGGACATCATGAGCTAGTAGATGCAGTTTATGAATCCCATGCACAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCCATTATAAGACATCTTCAAACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

227

Amino Acids

26.31

Weight (kDa)

8.95

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 171	1.5e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22630 AT2G22630 AT4G37940 AT4G37940 AT4G37940 AT4G37940
fragaria_vesca	FvH4_1g19110 FvH4_1g19110
malus_domestica	MD01G1043900.v1.1 MD15G1307400.v1.1
prunus_persica	Prupe.6G208900_v2.0.a1
pyrus_communis	pycom01g07090
rosa_chinensis	RchiOBHm_Chr2g0110101
rosa_laevigata	RLG00000017789
rosa_roxburghii	Rroxscaffold_2G00133720
rosa_rugosa	Rorug02G0165700
rosa_samantha	Rh2AG217500 Rh2BG227700 Rh2CG219700 Rh2DG223300
rosa_wichuraiana	Rw2G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AasI	GACNNNNNNGTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	408, 429
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	465, 622
AgsI	TTSAA	4 cut(s)	200, 208, 392, 675
AluBI	AGCT	7 cut(s)	95, 160, 177, 454, 592, 637, 681
AluI	AGCT	7 cut(s)	95, 160, 177, 454, 592, 637, 681
Alw26I	GTCTC	2 cut(s)	86, 137
AlwI	GGATC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	631, 634
ApoI	RAATTY	2 cut(s)	408, 429
BauI	CACGAG	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	618, 646
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	86, 137
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	632
BisI	GCNGC	2 cut(s)	632, 635
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	2 cut(s)	633, 636
BmsI	GCATC	2 cut(s)	257, 589
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 622
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	465, 622
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	618, 646
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	594, 640
BslI	CCNNNNNNNGG	2 cut(s)	465, 622
BsmAI	GTCTC	2 cut(s)	86, 137
BsmFI	GGGAC	2 cut(s)	594, 640
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	21, 30
Bsp1720I	GCTNAGC	1 cut(s)	638
BspCNI	CTCAG	1 cut(s)	640
BspDI	ATCGAT	1 cut(s)	33
BspHI	TCATGA	2 cut(s)	481, 586
BspMAI	CTGCAG	1 cut(s)	636
BspPI	GGATC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	21, 30
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	298, 307
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	175, 644
BstDEI	CTNAG	4 cut(s)	216, 287, 638, 648
BstKTI	GATC	2 cut(s)	24, 33
BstMAI	GTCTC	2 cut(s)	86, 137
BstMBI	GATC	2 cut(s)	21, 30
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 307, 643
BstSFI	CTRYAG	1 cut(s)	632
BstV1I	GCAGC	2 cut(s)	618, 646
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	150, 187
Cac8I	GCNNGC	2 cut(s)	175, 644
CciI	TCATGA	2 cut(s)	481, 586
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	3 cut(s)	482, 587, 617
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	4 cut(s)	216, 287, 638, 648
DpnI	GATC	2 cut(s)	23, 32
DpnII	GATC	2 cut(s)	21, 30
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	408
FaeI	CATG	3 cut(s)	485, 590, 620
FaqI	GGGAC	2 cut(s)	594, 640
FatI	CATG	3 cut(s)	481, 586, 616
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	632, 635
Fsp4HI	GCNGC	2 cut(s)	632, 635
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	2 cut(s)	632, 635
GsuI	CTGGAG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	485, 590, 620
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	6 cut(s)	38, 204, 382, 469, 517, 611
Hpy166II	GTNNAC	3 cut(s)	50, 386, 401
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	6 cut(s)	25, 88, 482, 501, 524, 587
Hpy8I	GTNNAC	3 cut(s)	50, 386, 401
Hpy99I	CGWCG	2 cut(s)	122, 565
HpyAV	CCTTC	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	403, 560
HpyCH4V	TGCA	6 cut(s)	248, 301, 310, 602, 620, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 307, 643
HpyF3I	CTNAG	4 cut(s)	216, 287, 638, 648
HpySE526I	ACGT	2 cut(s)	403, 560
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	485, 590, 620
Kzo9I	GATC	2 cut(s)	21, 30
LmnI	GCTCC	2 cut(s)	182, 226
LpnPI	CCDG	8 cut(s)	38, 187, 193, 258, 472, 608, 656, 660
Lsp1109I	GCAGC	2 cut(s)	618, 646
LweI	GCATC	2 cut(s)	257, 589
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	403, 560
MaeIII	GTNAC	2 cut(s)	55, 366
MalI	GATC	2 cut(s)	23, 32
MboI	GATC	2 cut(s)	21, 30
MboII	GAAGA	4 cut(s)	25, 40, 84, 663
MluCI	AATT	7 cut(s)	296, 316, 341, 408, 429, 444, 494
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	118, 217, 268, 459, 500
MseI	TTAA	4 cut(s)	258, 344, 360, 447
MwoI	GCNNNNNNNGC	3 cut(s)	298, 307, 643
NdeII	GATC	2 cut(s)	21, 30
NlaIII	CATG	3 cut(s)	485, 590, 620
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	2 cut(s)	481, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	5 cut(s)	38, 204, 469, 517, 611
PkrI	GCNGC	2 cut(s)	633, 636
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	636
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	258, 344, 360, 447
SatI	GCNGC	2 cut(s)	632, 635
Sau3AI	GATC	2 cut(s)	21, 30
SchI	GAGTC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	257, 589
SfcI	CTRYAG	1 cut(s)	632
Sse9I	AATT	7 cut(s)	296, 316, 341, 408, 429, 444, 494
SspMI	CTAG	1 cut(s)	593
TaiI	ACGT	2 cut(s)	406, 563
TaqI	TCGA	5 cut(s)	33, 492, 500, 534, 563
TasI	AATT	7 cut(s)	296, 316, 341, 408, 429, 444, 494
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	5 cut(s)	38, 204, 469, 517, 611
Tru1I	TTAA	4 cut(s)	258, 344, 360, 447
Tru9I	TTAA	4 cut(s)	258, 344, 360, 447
TscAI	CASTG	2 cut(s)	157, 187
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	631, 634
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	7 cut(s)	254, 431, 456, 467, 498, 509, 624
TspRI	CASTG	2 cut(s)	157, 187
XapI	RAATTY	2 cut(s)	408, 429
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.