AT4G37940
MADS Family

Agamous-like MADS-box protein AGL21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009755
Physical Location & Seq
Reverse (-)
17835217 .. 17838969
3753 bp
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UTR
Exon/CDS
Intron
AT4G37940.2

Sequence Viewer

Length: 687 bp
ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACTTTCTCCAAACGAAGAAAGGGCCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGTGATGCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCCAGCATGAAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTATTGAACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGACAAGAACTGCATGCTTTGCAAGAAAATCATCGGCAAATGATGGGAGAACAGCTAAATGGTTTAAGTGTTAACGAGCTAAACAGTCTTGAGAATCAAATTGAGATAAGTTTGCGTGGAATTCGTATGAGAAAGGAACAACTGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTTATTCATCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAGCTCTACAAGAAGGCTTATATGGCAAACACAAACGGGTTTACACACCGTGAAGTAGCTGTTGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAGCCTGAACATTCCGATTATGACACTCCACCAAGAGCAAACGAATAA

Protein Analysis

228

Amino Acids

26.41

Weight (kDa)

8.9

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 22 - 110 1.1e-26 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22630 AT2G22630 AT4G37940 AT4G37940 AT4G37940 AT4G37940
fragaria_vesca FvH4_1g19110 FvH4_1g19110
malus_domestica MD01G1043900.v1.1 MD15G1307400.v1.1
prunus_persica Prupe.6G208900_v2.0.a1
pyrus_communis pycom01g07090
rosa_chinensis RchiOBHm_Chr2g0110101
rosa_laevigata RLG00000017789
rosa_roxburghii Rroxscaffold_2G00133720
rosa_rugosa Rorug02G0165700
rosa_samantha Rh2AG217500 Rh2BG227700 Rh2CG219700 Rh2DG223300
rosa_wichuraiana Rw2G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 49
AciI CCGC 2 cut(s) 246, 599
AclWI GGATC 2 cut(s) 16, 38
AcsI RAATTY 1 cut(s) 408
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 1 cut(s) 510
AgsI TTSAA 2 cut(s) 42, 241
AluBI AGCT 9 cut(s) 103, 107, 160, 177, 278, 343, 367, 538, 593
AluI AGCT 9 cut(s) 103, 107, 160, 177, 278, 343, 367, 538, 593
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 16, 38
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 278, 628
ApoI RAATTY 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 265, 615
BccI CCATC 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 104, 147, 501
BisI GCNGC 2 cut(s) 279, 629
BlsI GCNGC 2 cut(s) 280, 630
BmgT120I GGNCC 1 cut(s) 79
BmsI GCATC 2 cut(s) 109, 257
BmtI GCTAGC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 398, 423
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 607
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 1 cut(s) 632
BseXI GCAGC 2 cut(s) 265, 615
BshFI GGCC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 3 cut(s) 21, 30, 219
BspACI CCGC 2 cut(s) 246, 599
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 107
BspPI GGATC 2 cut(s) 16, 38
BspTNI GGTCTC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 21, 30, 219
Bst4CI ACNGT 3 cut(s) 374, 432, 584
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 4 cut(s) 105, 175, 303, 641
BstDEI CTNAG 4 cut(s) 287, 455, 618, 635
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 3 cut(s) 24, 33, 222
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 21, 30, 219
BstMWI GCNNNNNNNGC 2 cut(s) 307, 557
BstNSI RCATGY 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 265, 615
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 33
BtsCI GGATG 1 cut(s) 607
Cac8I GCNNGC 4 cut(s) 105, 175, 303, 641
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 1 cut(s) 509
CviAII CATG 2 cut(s) 184, 302
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 4 cut(s) 287, 455, 618, 635
DpnI GATC 3 cut(s) 23, 32, 221
DpnII GATC 3 cut(s) 21, 30, 219
DraIII CACNNNGTG 1 cut(s) 584
Ecl136II GAGCTC 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 538
EcoICRI GAGCTC 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 540
FaeI CATG 2 cut(s) 187, 305
FaiI YATR 7 cut(s) 165, 185, 303, 416, 555, 557, 660
FatI CATG 2 cut(s) 183, 301
FauI CCCGC 1 cut(s) 253
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 279, 629
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 2 cut(s) 279, 629
FspBI CTAG 3 cut(s) 104, 147, 501
GluI GCNGC 2 cut(s) 279, 629
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 187, 305
HincII GTYRAC 2 cut(s) 361, 435
HindII GTYRAC 2 cut(s) 361, 435
HinfI GANTC 7 cut(s) 38, 382, 436, 469, 517, 608, 622
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 4 cut(s) 50, 361, 435, 576
Hpy188I TCNGA 3 cut(s) 253, 621, 655
Hpy188III TCNNGA 5 cut(s) 88, 377, 440, 482, 524
Hpy8I GTNNAC 4 cut(s) 50, 361, 435, 576
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 3 cut(s) 374, 432, 584
HpyCH4V TGCA 4 cut(s) 173, 301, 310, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 557
HpyF3I CTNAG 4 cut(s) 287, 455, 618, 635
Hsp92II CATG 2 cut(s) 187, 305
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 3 cut(s) 21, 30, 219
LmnI GCTCC 2 cut(s) 182, 535
LpnPI CCDG 5 cut(s) 166, 193, 467, 653, 657
Lsp1109I GCAGC 2 cut(s) 265, 615
LweI GCATC 2 cut(s) 109, 257
MaeI CTAG 3 cut(s) 104, 147, 501
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 23, 32, 221
MboI GATC 3 cut(s) 21, 30, 219
MboII GAAGA 4 cut(s) 18, 25, 84, 133
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 2 cut(s) 387, 408
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 3 cut(s) 118, 459, 500
MseI TTAA 2 cut(s) 353, 360
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 307, 557
NdeII GATC 3 cut(s) 21, 30, 219
NheI GCTAGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 187, 305
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PfeI GAWTC 6 cut(s) 38, 382, 469, 517, 608, 622
PkrI GCNGC 2 cut(s) 280, 630
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 353, 360
SatI GCNGC 2 cut(s) 279, 629
Sau3AI GATC 3 cut(s) 21, 30, 219
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 2 cut(s) 109, 257
SmlI CTYRAG 2 cut(s) 377, 438
SmoI CTYRAG 2 cut(s) 377, 438
SphI GCATGC 1 cut(s) 305
Sse9I AATT 2 cut(s) 387, 408
SsiI CCGC 2 cut(s) 246, 599
SspMI CTAG 3 cut(s) 104, 147, 501
SstI GAGCTC 1 cut(s) 540
TaaI ACNGT 3 cut(s) 374, 432, 584
TaqI TCGA 3 cut(s) 33, 222, 492
TaqII GACCGA 1 cut(s) 119
TasI AATT 2 cut(s) 387, 408
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 6 cut(s) 38, 382, 469, 517, 608, 622
Tru1I TTAA 2 cut(s) 353, 360
Tru9I TTAA 2 cut(s) 353, 360
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 278, 628
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 200, 467, 509, 621
TspGWI ACGGA 1 cut(s) 529
XapI RAATTY 1 cut(s) 408
XceI RCATGY 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 3 cut(s) 104, 147, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.