MD15G1307400.v1.1

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009755
Physical Location & Seq
Reverse (-)
30631505 .. 30636365
4861 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1307400.v1.1.491

Sequence Viewer

Length: 336 bp
ATGAAGTCGGTGATAGAGAGATACAATAGATCAAAGGAGGAACATCAGCAACTTCTTTACCCAGCTTCAGAAGTGAAGTTTTGGCAAAGCGAGGTAGCCAACTTAAGGCAACAACTACAGAACTTGAAAGAAAATCATCGGCAATTCATGGGAGAACAACTTTGTGGTTTAAGTGTCAAAGAACTACAAGGTCTAGAAAGTCAATTGGAAATGAGTCTGCAGGGAACTCGAACGAAAAAGCGTAATGTCATCCATCAACAAAATATGGAACTGTACAAGAAGGTGAATCTCTTTTGCCAAAAAAAAAAATTGAAATTACTCAAGAAGGTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box

Protein Analysis

112

Amino Acids

13.31

Weight (kDa)

9.83

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 23 - 102 1.3e-20 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22630 AT2G22630 AT4G37940 AT4G37940 AT4G37940 AT4G37940
fragaria_vesca FvH4_1g19110 FvH4_1g19110
malus_domestica MD01G1043900.v1.1 MD15G1307400.v1.1
prunus_persica Prupe.6G208900_v2.0.a1
pyrus_communis pycom01g07090
rosa_chinensis RchiOBHm_Chr2g0110101
rosa_laevigata RLG00000017789
rosa_roxburghii Rroxscaffold_2G00133720
rosa_rugosa Rorug02G0165700
rosa_samantha Rh2AG217500 Rh2BG227700 Rh2CG219700 Rh2DG223300
rosa_wichuraiana Rw2G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 105
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 127, 313
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 22, 295
BccI CCATC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 116, 218
BfrI CTTAAG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 273
BssMI GATC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 273
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 116, 218
BtsCI GGATG 1 cut(s) 249
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 148
CviJI RGCY 2 cut(s) 65, 98
CviKI_1 RGCY 2 cut(s) 65, 98
CviQI GTAC 1 cut(s) 274
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 51
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 266
FatI CATG 1 cut(s) 147
FokI GGATG 1 cut(s) 236
FspBI CTAG 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 151
HinfI GANTC 2 cut(s) 214, 286
HphI GGTGA 2 cut(s) 22, 295
Hpy188I TCNGA 2 cut(s) 70, 335
Hpy188III TCNNGA 2 cut(s) 194, 322
HpyAV CCTTC 2 cut(s) 274, 319
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 220
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 75, 206
MaeI CTAG 1 cut(s) 194
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MfeI CAATTG 1 cut(s) 203
MluCI AATT 4 cut(s) 143, 203, 308, 314
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 2 cut(s) 31, 85
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 2 cut(s) 104, 170
MspCI CTTAAG 1 cut(s) 103
MunI CAATTG 1 cut(s) 203
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 286
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 222
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 104, 170
Sau3AI GATC 1 cut(s) 29
SchI GAGTC 1 cut(s) 223
SetI ASST 5 cut(s) 67, 96, 193, 285, 330
SfcI CTRYAG 2 cut(s) 116, 218
SgeI CNNG 9 cut(s) 74, 103, 136, 160, 200, 206, 233, 240, 289
SmlI CTYRAG 2 cut(s) 103, 320
SmoI CTYRAG 2 cut(s) 103, 320
Sse9I AATT 4 cut(s) 143, 203, 308, 314
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 229
TasI AATT 4 cut(s) 143, 203, 308, 314
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 104, 170
Tru9I TTAA 2 cut(s) 104, 170
TspDTI ATGAA 2 cut(s) 17, 136
Vha464I CTTAAG 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.