Rorug02G0165700
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009755
Physical Location & Seq
Forward (+)
14769835 .. 14781779
11945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0165700.1

Sequence Viewer

Length: 1167 bp
ATGGCTCCTCTAAACCCTAATCGAGTCTTCTGCTCCGCCGTTACTGCTTTTCAACGTCAATCACCATCGACTCCTCTGATCCTTGGTATCACCATCCTCCTATTTCATGGGCATGGGCTATGCGCTGGCATCTATGGCGACCTTAATAGTCGCCCAAACATCAATCACCAAGAATTCAACGACGATGCCAAAGCCGGGGGCAAAGCCTTTTACTCTGCCGGCGACTTCACCGTCGATATTACTCACTTCTCTGAGAACATCAATCTCGATCTAACCAAGTACGGCCTCTACGCCAACCTCCACCTATTTCATGGGGGTGGCTTTGCTGCGGCTGATCTGGATCGCTCATTACTGACCCGAATCGACAGTCGCATTGCAGGGATGAAGCCTACAATATATGCGCTTGTTTCGCTGGATGCTGCATCTCATGGACTCGTGAAGAACAATACTCGGGATGTGCTTTGGTCAAAGTGGTTCCAATCGTGGCCAGAGATGCAAAGAACACCGGATGTCTGGGTGCCCAGATCAGTGGGCTGGTTGGGTTGTACTCGGACTCCCATCGATGCCAAGTTCTTGATAACTTCAGTGGTGAGGGTGACAACGAGAGTACCTACAATTTGGCCAGAGTGGGTTGGACGATGGTTGTTGGGCTGGCCGAAATCTATGACAGAGGAGATGCAGATGGGTGTCGACGGTCCGGCCTTTGGTGAAAGGTTGTGGGCATCTCTTCTTGGGGTTTCCATAGTAAATTGGAGTTCCTTGTTTTTGGGTTTTGGGTTTTGCAAAACTTTGGGTCCAATATTGGGCTTCTGGTTTCTGGACCCTTGGAATTTGGAAACTTTGGATCGGGAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTTGAACTATATGGAGAGGTCTTGGGAAACAGGATGAGGCTAGGATGCAGAACTTTGATGCAGCTGTTGGGGATGTTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

388

Amino Acids

43.89

Weight (kDa)

5.96

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22630 AT2G22630 AT4G37940 AT4G37940 AT4G37940 AT4G37940
fragaria_vesca FvH4_1g19110 FvH4_1g19110
malus_domestica MD01G1043900.v1.1 MD15G1307400.v1.1
prunus_persica Prupe.6G208900_v2.0.a1
pyrus_communis pycom01g07090
rosa_chinensis RchiOBHm_Chr2g0110101
rosa_laevigata RLG00000017789
rosa_roxburghii Rroxscaffold_2G00133720
rosa_rugosa Rorug02G0165700
rosa_samantha Rh2AG217500 Rh2BG227700 Rh2CG219700 Rh2DG223300
rosa_wichuraiana Rw2G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 690
AciI CCGC 2 cut(s) 36, 329
AclI AACGTT 1 cut(s) 968
AclWI GGATC 3 cut(s) 73, 348, 852
AcoI YGGCCR 3 cut(s) 485, 620, 653
AcsI RAATTY 3 cut(s) 173, 829, 1007
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 3 cut(s) 281, 547, 609
AfiI CCNNNNNNNGG 3 cut(s) 195, 704, 803
AgsI TTSAA 8 cut(s) 53, 178, 887, 892, 935, 962, 1030, 1088
AluBI AGCT 5 cut(s) 868, 901, 991, 1054, 1147
AluI AGCT 5 cut(s) 868, 901, 991, 1054, 1147
AlwI GGATC 3 cut(s) 73, 348, 852
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 6 cut(s) 283, 485, 620, 653, 699, 1062
ApaI GGGCCC 1 cut(s) 1066
ApeKI GCWGC 4 cut(s) 326, 419, 1054, 1144
ApoI RAATTY 3 cut(s) 173, 829, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AspLEI GCGC 3 cut(s) 125, 403, 985
AspS9I GGNCC 5 cut(s) 695, 794, 820, 1062, 1063
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 7 cut(s) 54, 82, 158, 220, 601, 607, 719
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 3 cut(s) 695, 794, 820
BaeGI GKGCMC 2 cut(s) 522, 1066
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BalI TGGCCA 2 cut(s) 487, 622
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 1066
BauI CACGAG 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 313, 406, 1041, 1156
BccI CCATC 5 cut(s) 73, 101, 566, 633, 676
BceAI ACGGC 2 cut(s) 23, 298
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 1124
BfmI CTRYAG 1 cut(s) 1055
BglI GCCNNNNNGGC 1 cut(s) 914
BisI GCNGC 5 cut(s) 327, 330, 420, 1055, 1145
BlsI GCNGC 5 cut(s) 328, 331, 421, 1056, 1146
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 3 cut(s) 695, 794, 820
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 5 cut(s) 695, 794, 820, 1062, 1063
BmiI GGNNCC 7 cut(s) 6, 476, 519, 795, 822, 1063, 1064
BmrFI CCNGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 82, 195, 824
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 704, 803
Bse118I RCCGGY 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 82, 195, 824
BseGI GGATG 8 cut(s) 93, 387, 421, 460, 514, 1122, 1133, 1161
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 3 cut(s) 195, 704, 803
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 243, 888
BseRI GAGGAG 3 cut(s) 63, 686, 1051
BseSI GKGCMC 2 cut(s) 522, 1066
BseXI GCAGC 4 cut(s) 313, 406, 1041, 1156
BshFI GGCC 6 cut(s) 285, 487, 622, 655, 701, 1064
BshNI GGYRCC 1 cut(s) 517
BshVI ATCGAT 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 4 cut(s) 195, 219, 506, 698
BslI CCNNNNNNNGG 3 cut(s) 195, 704, 803
BsnI GGCC 6 cut(s) 285, 487, 622, 655, 701, 1064
BsoBI CYCGRG 1 cut(s) 450
Bsp120I GGGCCC 1 cut(s) 1062
Bsp1286I GDGCHC 2 cut(s) 522, 1066
Bsp143I GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
BspACI CCGC 2 cut(s) 36, 329
BspANI GGCC 6 cut(s) 285, 487, 622, 655, 701, 1064
BspCNI CTCAG 2 cut(s) 244, 887
BspDI ATCGAT 1 cut(s) 561
BspLI GGNNCC 7 cut(s) 6, 476, 519, 795, 822, 1063, 1064
BspMAI CTGCAG 1 cut(s) 1059
BspPI GGATC 3 cut(s) 73, 348, 852
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 82, 195, 824
BssMI GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 82, 824
Bst2BI CACGAG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 232, 368, 695
Bst6I CTCTTC 1 cut(s) 732
BstC8I GCNNGC 3 cut(s) 127, 220, 653
BstDEI CTNAG 2 cut(s) 252, 874
BstF5I GGATG 8 cut(s) 93, 387, 421, 460, 514, 1122, 1133, 1161
BstHHI GCGC 3 cut(s) 125, 403, 985
BstKTI GATC 7 cut(s) 81, 271, 337, 343, 527, 847, 1000
BstMBI GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
BstMWI GCNNNNNNNGC 5 cut(s) 44, 135, 409, 493, 914
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 1055
BstSLI GKGCMC 2 cut(s) 522, 1066
BstV1I GCAGC 4 cut(s) 313, 406, 1041, 1156
BstV2I GAAGAC 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 561
BsuRI GGCC 6 cut(s) 285, 487, 622, 655, 701, 1064
BsuTUI ATCGAT 1 cut(s) 561
BtsCI GGATG 8 cut(s) 93, 387, 421, 460, 514, 1122, 1133, 1161
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 4 cut(s) 534, 591, 924, 1019
Cac8I GCNNGC 3 cut(s) 127, 220, 653
CfoI GCGC 3 cut(s) 125, 403, 985
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 5 cut(s) 695, 794, 820, 1062, 1063
ClaI ATCGAT 1 cut(s) 561
CpoI CGGWCCG 1 cut(s) 695
Csp6I GTAC 3 cut(s) 280, 546, 608
CspI CGGWCCG 1 cut(s) 695
CviAII CATG 4 cut(s) 107, 113, 311, 428
CviQI GTAC 3 cut(s) 280, 546, 608
DdeI CTNAG 2 cut(s) 252, 874
DpnI GATC 7 cut(s) 80, 270, 336, 342, 526, 846, 999
DpnII GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 3 cut(s) 485, 620, 653
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 82, 824
Eco24I GRGCYC 1 cut(s) 1066
Eco47I GGWCC 3 cut(s) 695, 794, 820
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 1062
EcoRI GAATTC 1 cut(s) 173
EcoT14I CCWWGG 2 cut(s) 82, 824
EcoT38I GRGCYC 1 cut(s) 1066
ErhI CCWWGG 2 cut(s) 82, 824
FaeI CATG 4 cut(s) 110, 116, 314, 431
FatI CATG 4 cut(s) 106, 112, 310, 427
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 5 cut(s) 327, 330, 420, 1055, 1145
FokI GGATG 7 cut(s) 80, 394, 428, 467, 521, 1129, 1140
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 5 cut(s) 327, 330, 420, 1055, 1145
FspBI CTAG 1 cut(s) 1124
GlaI GCGC 3 cut(s) 124, 402, 984
GluI GCNGC 5 cut(s) 327, 330, 420, 1055, 1145
HaeIII GGCC 6 cut(s) 285, 487, 622, 655, 701, 1064
HapII CCGG 4 cut(s) 195, 219, 506, 698
HhaI GCGC 3 cut(s) 125, 403, 985
Hin1II CATG 4 cut(s) 110, 116, 314, 431
Hin6I GCGC 3 cut(s) 123, 401, 983
HinP1I GCGC 3 cut(s) 123, 401, 983
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 5 cut(s) 24, 70, 360, 432, 553
HpaII CCGG 4 cut(s) 195, 219, 506, 698
HphI GGTGA 7 cut(s) 54, 82, 158, 220, 601, 607, 719
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 5 cut(s) 78, 253, 552, 877, 1006
Hpy188III TCNNGA 7 cut(s) 266, 338, 436, 452, 574, 818, 848
Hpy8I GTNNAC 1 cut(s) 691
Hpy99I CGWCG 3 cut(s) 185, 236, 695
HpyAV CCTTC 1 cut(s) 973
HpyCH4III ACNGT 3 cut(s) 232, 368, 695
HpyCH4IV ACGT 2 cut(s) 55, 968
HpyCH4V TGCA 8 cut(s) 377, 422, 496, 679, 783, 1057, 1131, 1144
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 135, 409, 493, 914
HpyF3I CTNAG 2 cut(s) 252, 874
HpySE526I ACGT 2 cut(s) 55, 968
Hsp92II CATG 4 cut(s) 110, 116, 314, 431
HspAI GCGC 3 cut(s) 123, 401, 983
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
LmnI GCTCC 5 cut(s) 10, 38, 906, 988, 1038
Lsp1109I GCAGC 4 cut(s) 313, 406, 1041, 1156
MaeI CTAG 1 cut(s) 1124
MaeII ACGT 2 cut(s) 55, 968
MaeIII GTNAC 3 cut(s) 40, 595, 1158
MalI GATC 7 cut(s) 80, 270, 336, 342, 526, 846, 999
MboI GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
MboII GAAGA 5 cut(s) 19, 451, 719, 955, 958
MhlI GDGCHC 2 cut(s) 522, 1066
MlsI TGGCCA 2 cut(s) 487, 622
MluCI AATT 8 cut(s) 173, 615, 748, 829, 882, 887, 1007, 1077
MluNI TGGCCA 2 cut(s) 487, 622
MlyI GAGTC 4 cut(s) 33, 64, 426, 547
MmeI TCCRAC 1 cut(s) 613
Mox20I TGGCCA 2 cut(s) 487, 622
MroNI GCCGGC 1 cut(s) 218
MscI TGGCCA 2 cut(s) 487, 622
MseI TTAA 4 cut(s) 144, 951, 971, 1076
MslI CAYNNNNRTG 2 cut(s) 111, 315
Msp20I TGGCCA 2 cut(s) 487, 622
MspA1I CMGCKG 1 cut(s) 1147
MspI CCGG 4 cut(s) 195, 219, 506, 698
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 5 cut(s) 44, 135, 409, 493, 914
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 196
NdeII GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 110, 116, 314, 431
NlaIV GGNNCC 7 cut(s) 6, 476, 519, 795, 822, 1063, 1064
NmuCI GTSAC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 5 cut(s) 328, 331, 421, 1056, 1146
PleI GAGTC 4 cut(s) 32, 64, 426, 547
PpsI GAGTC 4 cut(s) 32, 64, 426, 547
Psp1406I AACGTT 1 cut(s) 968
PspN4I GGNNCC 7 cut(s) 6, 476, 519, 795, 822, 1063, 1064
PspOMI GGGCCC 1 cut(s) 1062
PspPI GGNCC 5 cut(s) 695, 794, 820, 1062, 1063
PstI CTGCAG 1 cut(s) 1059
PvuII CAGCTG 1 cut(s) 1147
RsaI GTAC 3 cut(s) 281, 547, 609
RsaNI GTAC 3 cut(s) 280, 546, 608
RseI CAYNNNNRTG 2 cut(s) 111, 315
Rsr2I CGGWCCG 1 cut(s) 695
RsrII CGGWCCG 1 cut(s) 695
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 4 cut(s) 144, 951, 971, 1076
SatI GCNGC 5 cut(s) 327, 330, 420, 1055, 1145
Sau3AI GATC 7 cut(s) 78, 268, 334, 340, 524, 844, 997
Sau96I GGNCC 5 cut(s) 695, 794, 820, 1062, 1063
SchI GAGTC 4 cut(s) 33, 64, 426, 547
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 522, 1066
SfcI CTRYAG 1 cut(s) 1055
SinI GGWCC 3 cut(s) 695, 794, 820
SmiMI CAYNNNNRTG 2 cut(s) 111, 315
Sse9I AATT 8 cut(s) 173, 615, 748, 829, 882, 887, 1007, 1077
SsiI CCGC 2 cut(s) 36, 329
SspI AATATT 1 cut(s) 801
SspMI CTAG 1 cut(s) 1124
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 82, 824
TaaI ACNGT 3 cut(s) 232, 368, 695
TaiI ACGT 2 cut(s) 58, 971
TaqI TCGA 7 cut(s) 22, 68, 234, 267, 363, 561, 690
TasI AATT 8 cut(s) 173, 615, 748, 829, 882, 887, 1007, 1077
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 4 cut(s) 144, 951, 971, 1076
Tru9I TTAA 4 cut(s) 144, 951, 971, 1076
TscAI CASTG 4 cut(s) 534, 591, 924, 1026
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 4 cut(s) 326, 419, 1054, 1144
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 95, 299, 398
TspRI CASTG 4 cut(s) 534, 591, 924, 1026
VpaK11BI GGWCC 3 cut(s) 695, 794, 820
XapI RAATTY 3 cut(s) 173, 829, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 690
XspI CTAG 1 cut(s) 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.