Prupe.6G208900_v2.0.a1
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009755
Physical Location & Seq
Forward (+)
21730701 .. 21737219
6519 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G208900.1

Sequence Viewer

Length: 633 bp
ATGGGGAGGGGTAAGATTGTGATCCGGCGGATCGATAATTCGACAAGTAGGCAAGTGACTTTCTCAAAGCGTAGAAAGGGTTTGATTAAGAAGGCAAAGGAGTTGGCAATTTTGTGTGATGCAGAAGTAGGACTTATGATCTTCTCAAGCACCGGAAAGCTATTTGAATTTTCAAGCAACAGCATGAAATCAGTGATAGAGAAATACAACAAATCAAAGGAGGGGCAGCAACAACTGCTTAACCAAGCATCAGAAATGAAGTTTTGGCAAAGGGAGGTAGCCAACTTAAGGCAACAACTGCAGAGCTTGAAAGAACATCATCGGCAGTGCATGGGAGAACAGCTTTATGGCTTGAGTGTCAAAGAACTGAAGGGTCTAGAAAGTCAATTAGAAATGAGTCTGCAGGGTATTCGTATGCAAAAGGAACAAATATTAACTGATGAAATAGAAGAGCTCAATGAAAAGAGCAATCTTGTTCATCAACAAAACATGGAACTCTTTAAAAAGGTTTATGGCACAACTGCTGTAAATTCAGAGAGCAGAAATGCCTGCATTCCCTATGGCATGAGCATAAGTGATGATTCGCATGTCCCGAACCAGCTTCAGCTGCGCCGGCCAAACCAACAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

211

Amino Acids

24.18

Weight (kDa)

9.42

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22630 AT2G22630 AT4G37940 AT4G37940 AT4G37940 AT4G37940
fragaria_vesca FvH4_1g19110 FvH4_1g19110
malus_domestica MD01G1043900.v1.1 MD15G1307400.v1.1
prunus_persica Prupe.6G208900_v2.0.a1
pyrus_communis pycom01g07090
rosa_chinensis RchiOBHm_Chr2g0110101
rosa_laevigata RLG00000017789
rosa_roxburghii Rroxscaffold_2G00133720
rosa_rugosa Rorug02G0165700
rosa_samantha Rh2AG217500 Rh2BG227700 Rh2CG219700 Rh2DG223300
rosa_wichuraiana Rw2G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 16, 38
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 2 cut(s) 167, 529
AcuI CTGAAG 2 cut(s) 389, 587
AfiI CCNNNNNNNGG 1 cut(s) 288
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 167, 174, 310
AluBI AGCT 6 cut(s) 160, 306, 343, 454, 601, 607
AluI AGCT 6 cut(s) 160, 306, 343, 454, 601, 607
Alw21I GWGCWC 1 cut(s) 456
AlwI GGATC 2 cut(s) 16, 38
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 226, 607
ApoI RAATTY 2 cut(s) 167, 529
AspLEI GCGC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 238, 594
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 299, 401
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 227, 608
BlsI GCNGC 2 cut(s) 228, 609
BmsI GCATC 2 cut(s) 109, 257
BpuEI CTTGAG 2 cut(s) 130, 373
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 288
BseXI GCAGC 2 cut(s) 238, 594
BshFI GGCC 1 cut(s) 616
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 3 cut(s) 25, 153, 613
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 3 cut(s) 21, 30, 138
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 616
BspDI ATCGAT 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 303, 405
BspPI GGATC 2 cut(s) 16, 38
BspQI GCTCTTC 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 612
BssMI GATC 3 cut(s) 21, 30, 138
Bst6I CTCTTC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 286
BstAPI GCANNNNNTGC 2 cut(s) 235, 298
BstC8I GCNNGC 2 cut(s) 550, 614
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 3 cut(s) 24, 33, 141
BstMBI GATC 3 cut(s) 21, 30, 138
BstMWI GCNNNNNNNGC 4 cut(s) 235, 298, 607, 613
BstNSI RCATGY 1 cut(s) 590
BstSFI CTRYAG 2 cut(s) 299, 401
BstV1I GCAGC 2 cut(s) 238, 594
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 616
BsuTUI ATCGAT 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 198, 332
Cac8I GCNNGC 2 cut(s) 550, 614
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 612
ClaI ATCGAT 1 cut(s) 33
CviAII CATG 5 cut(s) 184, 331, 490, 565, 587
CviJI RGCY 9 cut(s) 160, 281, 306, 343, 351, 454, 601, 607, 616
CviKI_1 RGCY 9 cut(s) 160, 281, 306, 343, 351, 454, 601, 607, 616
DpnI GATC 3 cut(s) 23, 32, 140
DpnII GATC 3 cut(s) 21, 30, 138
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 389, 587
EcoICRI GAGCTC 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 5 cut(s) 187, 334, 493, 568, 590
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 575
FatI CATG 5 cut(s) 183, 330, 489, 564, 586
Fnu4HI GCNGC 2 cut(s) 227, 608
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 2 cut(s) 227, 608
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 611
GluI GCNGC 2 cut(s) 227, 608
HaeIII GGCC 1 cut(s) 616
HapII CCGG 3 cut(s) 25, 153, 613
HhaI GCGC 1 cut(s) 612
Hin1II CATG 5 cut(s) 187, 334, 493, 568, 590
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HinfI GANTC 2 cut(s) 397, 581
HpaII CCGG 3 cut(s) 25, 153, 613
Hpy188I TCNGA 2 cut(s) 253, 535
Hpy188III TCNNGA 2 cut(s) 377, 592
HpyAV CCTTC 2 cut(s) 85, 364
HpyCH4V TGCA 6 cut(s) 122, 301, 330, 403, 418, 552
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 298, 607, 613
Hsp92II CATG 5 cut(s) 187, 334, 493, 568, 590
HspAI GCGC 1 cut(s) 610
KroI GCCGGC 1 cut(s) 612
KroNI GCCGGC 1 cut(s) 614
Kzo9I GATC 3 cut(s) 21, 30, 138
LguI GCTCTTC 1 cut(s) 444
LpnPI CCDG 6 cut(s) 38, 166, 389, 562, 611, 626
Lsp1109I GCAGC 2 cut(s) 238, 594
LweI GCATC 2 cut(s) 109, 257
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 23, 32, 140
MboI GATC 3 cut(s) 21, 30, 138
MboII GAAGA 2 cut(s) 133, 461
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 5 cut(s) 37, 108, 167, 386, 529
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 2 cut(s) 214, 268
MroNI GCCGGC 1 cut(s) 612
MseI TTAA 5 cut(s) 87, 240, 287, 434, 501
MspA1I CMGCKG 1 cut(s) 607
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 3 cut(s) 25, 153, 613
Mva1269I GAATGC 1 cut(s) 552
MwoI GCNNNNNNNGC 4 cut(s) 235, 298, 607, 613
NaeI GCCGGC 1 cut(s) 614
NdeII GATC 3 cut(s) 21, 30, 138
NgoMIV GCCGGC 1 cut(s) 612
NlaIII CATG 5 cut(s) 187, 334, 493, 568, 590
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 590
PciSI GCTCTTC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PctI GAATGC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 2 cut(s) 228, 609
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 456
PstI CTGCAG 2 cut(s) 303, 405
PvuII CAGCTG 1 cut(s) 607
SacI GAGCTC 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 5 cut(s) 87, 240, 287, 434, 501
SatI GCNGC 2 cut(s) 227, 608
Sau3AI GATC 3 cut(s) 21, 30, 138
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 456
SetI ASST 9 cut(s) 162, 279, 308, 345, 456, 510, 603, 609, 632
SfaNI GCATC 2 cut(s) 109, 257
SfcI CTRYAG 2 cut(s) 299, 401
SmlI CTYRAG 3 cut(s) 145, 286, 352
SmoI CTYRAG 3 cut(s) 145, 286, 352
Sse9I AATT 5 cut(s) 37, 108, 167, 386, 529
SsiI CCGC 1 cut(s) 28
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 456
TaqI TCGA 2 cut(s) 33, 41
TasI AATT 5 cut(s) 37, 108, 167, 386, 529
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 5 cut(s) 87, 240, 287, 434, 501
Tru9I TTAA 5 cut(s) 87, 240, 287, 434, 501
TscAI CASTG 2 cut(s) 198, 332
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 226, 607
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 5 cut(s) 200, 272, 456, 467, 474
TspRI CASTG 2 cut(s) 198, 332
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 2 cut(s) 167, 529
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 1 cut(s) 590
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.