Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Reverse (-)

9649690 .. 9651574

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGCTAAAGAATGTCAAAGATGCGTTTGATCGTGTTACCAAAAAGCAGAAACTATGCTATAGCAAAACGCATGAAGTGGTAGACAAAATGTCTCAAGAAATCGACAAGGCATTGAAAACGATACAGGAGGATAATCATGAATCTGTTGTTGCTGATCTGAAGAAAACTTTTGAGGAGATTGCTCCAATCAATCTACTAGAAGCGTCTCAGAAAGAAATAAATGGGGTTCTTACCAAATACCCGAAAGCTCTTGACAAAACTCTGAATCCAGATATATCGACGGCTTACAGAAACGTTAAGTTTGATACTCATACAGTTCATCAGATACTAGCTCAGTTTTTCTACAGGCAAGGCATGTACGACGTTGGTGACTGTTTCATTTCCGAGACTGGTGAGGTTAAGCCTGAATCTTCTGTTACTAAAGCTTTCATGGAAATGAATATGATACTTGAAGCCATGAAAGAACGGGATCTCGGACCAGCTTTGAAATGGGTAGCTTCAAACTCTGACAAGCTAAAGGAAGCAAAGTCAGATCTTGAGTTGAAACTTCACAGCCTTCACTTTTTGGAGATAGCTAAAGACAAAACCTCCGAAGAAGCTATCAACTACGCGAGAAAACACTTTGCTACGTATTCAGCAGATAGCTGCTGTTTCCCTGAGATACAGAAACTCATGTGCTCTCTCTTATGGATCAGAAACCTCAATAAATCCCCATACTCAGAGTTCCTCTCACCTGTATTGTGGACCAACGCTGCCAAGGAACTAACCCGACAATACTGCATCCTACTCGGTGAATCACCAGAGAGTCCTTTAAGTGTAACAGTTGCAGCAGGTTCACAAGTTTTACCGACGTTTTTGAAGTATTTGAACGTGCTGCCGGAGAAAAGAAAAGAGTGGCAAACAATGGAGCAACTTCTTGTACCTGTGGAACTCTCTGAAGAGTATCGCTTCTACTCGGTCTTTGTCTGCCCTGTCTCTAAAGAACACTCGAGCGAAGATAATCCGCCGATGAGATTGGCTTGCGGTCATGTCCTTTGCAAGCAGTCTATCAACAGAATGTCGAGGAATGGTTCAAGGTCGTTCAAGTGTCCTTATTGTCCAACAGATATTGATGCTTCGCAGTGTAAGCAGTTATATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

381

Amino Acids

43.65

Weight (kDa)

6.53

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	144 - 286	1.1e-36	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	324 - 365	2.1e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	614
AciI	CCGC	2 cut(s)	1007, 1026
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	2 cut(s)	480, 701
AcuI	CTGAAG	2 cut(s)	182, 960
AfaI	GTAC	2 cut(s)	362, 924
AgsI	TTSAA	9 cut(s)	118, 455, 490, 504, 547, 862, 871, 1077, 1087
AhdI	GACNNNNNGTC	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	4 cut(s)	99, 213, 383, 982
AlwI	GGATC	2 cut(s)	480, 701
Ama87I	CYCGRG	1 cut(s)	991
ApeKI	GCWGC	4 cut(s)	648, 755, 830, 877
AspS9I	GGNCC	2 cut(s)	479, 747
AsuHPI	GGTGA	5 cut(s)	383, 407, 726, 792, 806
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	479, 747
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	4 cut(s)	635, 742, 842, 864
BceAI	ACGGC	1 cut(s)	300
BcgI	CGANNNNNNTGC	4 cut(s)	762, 772, 796, 806
BcoDI	GTCTC	4 cut(s)	99, 213, 383, 982
BfaI	CTAG	2 cut(s)	200, 332
BfmI	CTRYAG	2 cut(s)	61, 346
BfuAI	ACCTGC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	4 cut(s)	649, 756, 831, 878
BlsI	GCNGC	4 cut(s)	650, 757, 832, 879
Bme18I	GGWCC	2 cut(s)	479, 747
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	991
BmgT120I	GGNCC	2 cut(s)	479, 747
BmsI	GCATC	3 cut(s)	13, 792, 1105
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpuEI	CTTGAG	2 cut(s)	81, 560
BsaAI	YACGTR	1 cut(s)	633
BsaJI	CCNNGG	1 cut(s)	759
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bse1I	ACTGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	783
BseMII	CTCAG	4 cut(s)	224, 350, 651, 735
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	635, 742, 842, 864
Bsh1236I	CGCG	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	683
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	881
BsmAI	GTCTC	4 cut(s)	99, 213, 383, 982
BsmBI	CGTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	991
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	5 cut(s)	31, 157, 472, 535, 693
BspACI	CCGC	2 cut(s)	1007, 1026
BspCNI	CTCAG	4 cut(s)	223, 349, 652, 734
BspFNI	CGCG	1 cut(s)	614
BspHI	TCATGA	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	480, 701
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	5 cut(s)	31, 157, 472, 535, 693
BssT1I	CCWWGG	1 cut(s)	759
Bst4CI	ACNGT	3 cut(s)	319, 377, 826
Bst6I	CTCTTC	1 cut(s)	936
BstBAI	YACGTR	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	1024, 1043
BstDEI	CTNAG	4 cut(s)	210, 336, 660, 721
BstF5I	GGATG	1 cut(s)	783
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	5 cut(s)	34, 160, 475, 538, 696
BstMAI	GTCTC	4 cut(s)	99, 213, 383, 982
BstMBI	GATC	5 cut(s)	31, 157, 472, 535, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	1129
BstNSI	RCATGY	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	61, 346
BstSNI	TACGTA	1 cut(s)	633
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	4 cut(s)	635, 742, 842, 864
BstX2I	RGATCY	2 cut(s)	472, 535
BstYI	RGATCY	2 cut(s)	472, 535
BtsCI	GGATG	1 cut(s)	783
BtsI	GCAGTG	1 cut(s)	1130
BtsIMutI	CAGTG	1 cut(s)	1130
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	2 cut(s)	1024, 1043
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	479, 747
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	361, 923
CviAII	CATG	7 cut(s)	74, 140, 358, 433, 460, 676, 1031
CviQI	GTAC	2 cut(s)	361, 923
DdeI	CTNAG	4 cut(s)	210, 336, 660, 721
DpnI	GATC	5 cut(s)	33, 159, 474, 537, 695
DpnII	GATC	5 cut(s)	31, 157, 472, 535, 693
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	936
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	936
EciI	GGCGGA	1 cut(s)	996
Eco105I	TACGTA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	759
Eco47I	GGWCC	2 cut(s)	479, 747
Eco57I	CTGAAG	2 cut(s)	182, 960
Eco88I	CYCGRG	1 cut(s)	991
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	7 cut(s)	77, 143, 361, 436, 463, 679, 1034
FatI	CATG	7 cut(s)	73, 139, 357, 432, 459, 675, 1030
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	649, 756, 831, 878
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	4 cut(s)	649, 756, 831, 878
FspBI	CTAG	2 cut(s)	200, 332
GluI	GCNGC	4 cut(s)	649, 756, 831, 878
HapII	CCGG	1 cut(s)	881
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	7 cut(s)	77, 143, 361, 436, 463, 679, 1034
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	5 cut(s)	143, 268, 410, 797, 808
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	5 cut(s)	383, 407, 726, 792, 806
Hpy166II	GTNNAC	3 cut(s)	85, 747, 839
Hpy188III	TCNNGA	5 cut(s)	98, 140, 254, 272, 539
Hpy8I	GTNNAC	3 cut(s)	85, 747, 839
Hpy99I	CGWCG	3 cut(s)	286, 368, 856
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	3 cut(s)	319, 377, 826
HpyCH4IV	ACGT	5 cut(s)	297, 366, 632, 854, 873
HpyCH4V	TGCA	3 cut(s)	783, 830, 1041
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1129
HpyF3I	CTNAG	4 cut(s)	210, 336, 660, 721
HpySE526I	ACGT	5 cut(s)	297, 366, 632, 854, 873
Hsp92II	CATG	7 cut(s)	77, 143, 361, 436, 463, 679, 1034
Kzo9I	GATC	5 cut(s)	31, 157, 472, 535, 693
LmnI	GCTCC	3 cut(s)	4, 190, 910
Lsp1109I	GCAGC	4 cut(s)	635, 742, 842, 864
LweI	GCATC	3 cut(s)	13, 792, 1105
MaeI	CTAG	2 cut(s)	200, 332
MaeII	ACGT	5 cut(s)	297, 366, 632, 854, 873
MaeIII	GTNAC	4 cut(s)	37, 371, 418, 820
MalI	GATC	5 cut(s)	33, 159, 474, 537, 695
MboI	GATC	5 cut(s)	31, 157, 472, 535, 693
MboII	GAAGA	5 cut(s)	175, 405, 608, 953, 1010
MflI	RGATCY	2 cut(s)	472, 535
MhlI	GDGCHC	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	1 cut(s)	1127
MnlI	CCTC	7 cut(s)	124, 169, 391, 601, 713, 740, 1059
MseI	TTAA	3 cut(s)	300, 402, 815
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	1 cut(s)	881
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	1129
NdeII	GATC	5 cut(s)	31, 157, 472, 535, 693
NlaIII	CATG	7 cut(s)	77, 143, 361, 436, 463, 679, 1034
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	991
PagI	TCATGA	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	143, 268, 410, 797
PkrI	GCNGC	4 cut(s)	650, 757, 832, 879
PleI	GAGTC	1 cut(s)	816
PpsI	GAGTC	1 cut(s)	816
Ppu21I	YACGTR	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	479, 747
PspXI	VCTCGAGB	1 cut(s)	991
PsuI	RGATCY	2 cut(s)	472, 535
RsaI	GTAC	2 cut(s)	362, 924
RsaNI	GTAC	2 cut(s)	361, 923
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	300, 402, 815
SatI	GCNGC	4 cut(s)	649, 756, 831, 878
Sau3AI	GATC	5 cut(s)	31, 157, 472, 535, 693
Sau96I	GGNCC	2 cut(s)	479, 747
SchI	GAGTC	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	3 cut(s)	13, 792, 1105
SfcI	CTRYAG	2 cut(s)	61, 346
Sfr274I	CTCGAG	1 cut(s)	991
SinI	GGWCC	2 cut(s)	479, 747
SlaI	CTCGAG	1 cut(s)	991
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	96, 539, 991
SmoI	CTYRAG	3 cut(s)	96, 539, 991
SnaBI	TACGTA	1 cut(s)	633
SsiI	CCGC	2 cut(s)	1007, 1026
SspMI	CTAG	2 cut(s)	200, 332
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	319, 377, 826
TaiI	ACGT	5 cut(s)	300, 369, 635, 857, 876
TaqI	TCGA	4 cut(s)	105, 281, 992, 1064
TaqII	GACCGA	1 cut(s)	949
TfiI	GAWTC	4 cut(s)	143, 268, 410, 797
Tru1I	TTAA	3 cut(s)	300, 402, 815
Tru9I	TTAA	3 cut(s)	300, 402, 815
TscAI	CASTG	1 cut(s)	1130
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	4 cut(s)	648, 755, 830, 877
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	7 cut(s)	90, 156, 311, 370, 421, 455, 476
TspRI	CASTG	1 cut(s)	1130
VpaK11BI	GGWCC	2 cut(s)	479, 747
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	991
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	200, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.