Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Reverse (-)

14683323 .. 14686865

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1046100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGCTGACCACCATTAAAGATGCATTTGATCGTGTTACAAAGAAGCAAAAGCTGTCAAGCTCTAAAGCTCAAGAAGTGTTCGATCTGATCGACAAAGAAATCAAGCAGACATTACAGAAGCTACAATCATCTAATGATCGTGAATCTCAGATTGATTGTAAGTCTTCTCTTGCTGAACTTAAAGCCAAATTAAAAGATATAGCTCCACTCAGTCAGTTGGAAAGCACGCAGAAGGAACTGAACCTAGCACTTAGCAAGTATCCAAAGATTCTGGAGAAATCCTGCATTCCTGATATATCCAAGGCTTATAGAAACATTGACTTTGATACCGACACAGTTAATGAGATAATTGGCAGCCATTTATATCGGCAGGGCCTATTCGAAGTTGGTGACTGTTTCATAAATGAGACTGAGGAATCAGAATCTGCAGCTGCTATGAAATCTCAGTTTCAGGAATTGTTTCAGATAGTTGAAGCAATGAAACATCGGAATCTAGAGCCAGCACTGAACTGGGCCGTGACTAACTCTGATAAACTCAAACCAAATGGATCAGACCTATTACTGAAACTTCACAGTCTGCAGTTTGTCGAAATAGTGCAAAAGGGAAATAGAGATGGGGCTCTCCAGTATTCAAAAACTTGTCTTGCTCCTTTTGCTTCCGACCATATGGCTGAAATACAAAAGCTGATGGGGGGTCTTCTGTGGACTGGAAGGCTTGAGCACTCCCCATACTCTCACTTATTATCACCAGCCAATTGGGACAAAGTGATGGGGGAGCTAACCAGGCAGTTCTGCAATATTCTGGGTCAGTCTTACAAGAGCCCGTTAAGTGTGACAATGGAGGCAGGGATTCAGGGTTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGCAGGAAAGAGACAGGAATGGCAATCTATGAAGCAGTTACCTGTACCAGTGGAGTTAGACCGTGAGTTTCATTTCCATTCTATATTTGTGTGTCCAGTATCAAGGGAACAATCAACAGAAGAAAATCCGCCTATGTTGATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTATGAAGATGTCAAAGAACGGTACAAAATCTTTCAAGTGTCCATACTGTCCTTCAGACGTCAATTCCGCACAGTGTAGGCCGCTTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

387

Amino Acids

43.65

Weight (kDa)

7.09

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 289	1.4e-36	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	329 - 370	6.5e-10	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1128
AciI	CCGC	3 cut(s)	1022, 1134, 1148
AclWI	GGATC	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	1104
AcyI	GRCGYC	1 cut(s)	1125
AfaI	GTAC	2 cut(s)	939, 1090
AflIII	ACRYGT	1 cut(s)	1045
AgsI	TTSAA	3 cut(s)	476, 636, 1102
AjnI	CCWGG	1 cut(s)	785
AluBI	AGCT	9 cut(s)	7, 55, 63, 71, 124, 206, 434, 688, 781
AluI	AGCT	9 cut(s)	7, 55, 63, 71, 124, 206, 434, 688, 781
Alw21I	GWGCWC	2 cut(s)	726, 1053
Alw26I	GTCTC	2 cut(s)	404, 898
AlwI	GGATC	1 cut(s)	559
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	376, 516, 1145
ApeKI	GCWGC	3 cut(s)	357, 431, 434
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	376, 516
AsuHPI	GGTGA	2 cut(s)	404, 741
AsuII	TTCGAA	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	625, 827
BbsI	GAAGAC	2 cut(s)	159, 692
Bbv12I	GWGCWC	2 cut(s)	726, 1053
BbvI	GCAGC	3 cut(s)	369, 421, 443
BccI	CCATC	3 cut(s)	611, 685, 766
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	787
BciVI	GTATCC	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	404, 898
BfaI	CTAG	2 cut(s)	248, 497
BfmI	CTRYAG	2 cut(s)	429, 581
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	358, 432, 435, 1148
BlsI	GCNGC	4 cut(s)	359, 433, 436, 1149
Bme1390I	CCNGG	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	376, 516
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	159, 692
BpmI	CTGGAG	2 cut(s)	296, 611
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	57, 740, 860
BsaHI	GRCGYC	1 cut(s)	1125
BsaJI	CCNNGG	1 cut(s)	303
Bse1I	ACTGG	5 cut(s)	518, 628, 715, 941, 989
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	787
BseDI	CCNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	4 cut(s)	164, 226, 405, 461
BseNI	ACTGG	5 cut(s)	518, 628, 715, 941, 989
BseXI	GCAGC	3 cut(s)	369, 421, 443
BshFI	GGCC	3 cut(s)	378, 518, 1147
BsiHKAI	GWGCWC	2 cut(s)	726, 1053
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	2 cut(s)	404, 898
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	378, 518, 1147
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	4 cut(s)	625, 726, 827, 1053
Bsp143I	GATC	5 cut(s)	31, 85, 90, 139, 551
BspACI	CCGC	3 cut(s)	1022, 1134, 1148
BspANI	GGCC	3 cut(s)	378, 518, 1147
BspCNI	CTCAG	4 cut(s)	163, 225, 406, 460
BspMAI	CTGCAG	2 cut(s)	433, 585
BspPI	GGATC	1 cut(s)	559
BspT104I	TTCGAA	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	5 cut(s)	518, 628, 715, 941, 989
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	5 cut(s)	31, 85, 90, 139, 551
BssNI	GRCGYC	1 cut(s)	1125
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	7 cut(s)	340, 398, 578, 956, 1088, 1115, 1140
Bst6I	CTCTTC	1 cut(s)	876
BstACI	GRCGYC	1 cut(s)	1125
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	230, 504, 1058
BstDEI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
BstKTI	GATC	5 cut(s)	34, 88, 93, 142, 554
BstMAI	GTCTC	2 cut(s)	404, 898
BstMBI	GATC	5 cut(s)	31, 85, 90, 139, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 787, 1057
BstNI	CCWGG	1 cut(s)	787
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	2 cut(s)	429, 581
BstV1I	GCAGC	3 cut(s)	369, 421, 443
BstV2I	GAAGAC	2 cut(s)	159, 692
BstXI	CCANNNNNNTGG	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	378, 518, 1147
BtsIMutI	CAGTG	3 cut(s)	506, 948, 1145
Cac8I	GCNNGC	3 cut(s)	230, 504, 1058
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	376, 516
Csp6I	GTAC	2 cut(s)	938, 1089
CviAII	CATG	2 cut(s)	1038, 1046
CviQI	GTAC	2 cut(s)	938, 1089
DdeI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
DpnI	GATC	5 cut(s)	33, 87, 92, 141, 553
DpnII	GATC	5 cut(s)	31, 85, 90, 139, 551
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
EciI	GGCGGA	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	625, 827
Eco57I	CTGAAG	1 cut(s)	1104
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	625, 827
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	1041, 1049
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	2 cut(s)	1037, 1045
FauNDI	CATATG	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	358, 432, 435, 1148
FriOI	GRGCYC	2 cut(s)	625, 827
Fsp4HI	GCNGC	4 cut(s)	358, 432, 435, 1148
FspBI	CTAG	2 cut(s)	248, 497
GluI	GCNGC	4 cut(s)	358, 432, 435, 1148
GsuI	CTGGAG	2 cut(s)	296, 611
HaeIII	GGCC	3 cut(s)	378, 518, 1147
Hin1I	GRCGYC	1 cut(s)	1125
Hin1II	CATG	2 cut(s)	1041, 1049
HinfI	GANTC	6 cut(s)	146, 271, 419, 425, 493, 853
HphI	GGTGA	2 cut(s)	404, 741
Hpy166II	GTNNAC	2 cut(s)	708, 1043
Hpy188III	TCNNGA	6 cut(s)	74, 143, 275, 293, 455, 497
Hpy8I	GTNNAC	2 cut(s)	708, 1043
HpyAV	CCTTC	3 cut(s)	229, 708, 1128
HpyCH4III	ACNGT	7 cut(s)	340, 398, 578, 956, 1088, 1115, 1140
HpyCH4IV	ACGT	1 cut(s)	1125
HpyCH4V	TGCA	7 cut(s)	26, 288, 431, 583, 601, 798, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 787, 1057
HpyF3I	CTNAG	5 cut(s)	150, 212, 254, 414, 447
HpySE526I	ACGT	1 cut(s)	1125
Hsp92I	GRCGYC	1 cut(s)	1125
Hsp92II	CATG	2 cut(s)	1041, 1049
Kzo9I	GATC	5 cut(s)	31, 85, 90, 139, 551
LmnI	GCTCC	4 cut(s)	4, 211, 655, 778
Lsp1109I	GCAGC	3 cut(s)	369, 421, 443
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	248, 497
MaeII	ACGT	1 cut(s)	1125
MaeIII	GTNAC	5 cut(s)	37, 392, 520, 835, 930
MalI	GATC	5 cut(s)	33, 87, 92, 141, 553
MboI	GATC	5 cut(s)	31, 85, 90, 139, 551
MboII	GAAGA	5 cut(s)	159, 692, 863, 1025, 1084
MfeI	CAATTG	1 cut(s)	757
MhlI	GDGCHC	4 cut(s)	625, 726, 827, 1053
MluCI	AATT	5 cut(s)	191, 351, 458, 757, 1129
MmeI	TCCRAC	2 cut(s)	201, 687
MnlI	CCTC	3 cut(s)	409, 838, 879
Mph1103I	ATGCAT	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	5 cut(s)	18, 183, 194, 342, 830
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	3 cut(s)	656, 787, 1057
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	5 cut(s)	31, 85, 90, 139, 551
NlaIII	CATG	2 cut(s)	1041, 1049
NmuCI	GTSAC	3 cut(s)	392, 520, 835
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	1049
NspV	TTCGAA	1 cut(s)	384
PciI	ACATGT	1 cut(s)	1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	6 cut(s)	146, 271, 419, 425, 493, 853
PkrI	GCNGC	4 cut(s)	359, 433, 436, 1149
PscI	ACATGT	1 cut(s)	1045
Psp6I	CCWGG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	785
PspPI	GGNCC	2 cut(s)	376, 516
PstI	CTGCAG	2 cut(s)	433, 585
PstNI	CAGNNNCTG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	939, 1090
RsaNI	GTAC	2 cut(s)	938, 1089
SaqAI	TTAA	5 cut(s)	18, 183, 194, 342, 830
SatI	GCNGC	4 cut(s)	358, 432, 435, 1148
Sau3AI	GATC	5 cut(s)	31, 85, 90, 139, 551
Sau96I	GGNCC	2 cut(s)	376, 516
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	4 cut(s)	625, 726, 827, 1053
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	429, 581
SfuI	TTCGAA	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	72, 719, 875
SmoI	CTYRAG	3 cut(s)	72, 719, 875
Sse9I	AATT	5 cut(s)	191, 351, 458, 757, 1129
SsiI	CCGC	3 cut(s)	1022, 1134, 1148
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	248, 497
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	7 cut(s)	340, 398, 578, 956, 1088, 1115, 1140
TaiI	ACGT	1 cut(s)	1128
TaqI	TCGA	4 cut(s)	84, 93, 384, 591
TasI	AATT	5 cut(s)	191, 351, 458, 757, 1129
TauI	GCSGC	1 cut(s)	1150
TfiI	GAWTC	6 cut(s)	146, 271, 419, 425, 493, 853
Tru1I	TTAA	5 cut(s)	18, 183, 194, 342, 830
Tru9I	TTAA	5 cut(s)	18, 183, 194, 342, 830
TscAI	CASTG	3 cut(s)	513, 948, 1145
TseFI	GTSAC	3 cut(s)	392, 520, 835
TseI	GCWGC	3 cut(s)	357, 431, 434
Tsp45I	GTSAC	3 cut(s)	392, 520, 835
TspDTI	ATGAA	7 cut(s)	391, 455, 497, 899, 938, 953, 1085
TspRI	CASTG	3 cut(s)	513, 948, 1145
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	248, 497
ZraI	GACGTC	1 cut(s)	1126
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.