Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Forward (+)

22186883 .. 22187941

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAAGCAGACGTTACAAAAGCTACAATCATCTAATGGTTGTGAATCTCAGGTTGATTGTAAGTCTTCTCTTGCTGAACTTAAAGTCAAGTTAAAAGATATAGCTCCACTCAGTCAGTTGGAAAGCATGCAGAAGGAACTGAACCTAGCACTTAGCAAGTATCCAAAGATTCTGGAGAAATCCTTCATTCCTGATATATCCAAGGCTTATAGAAACATTGACTTTGATACCCACACAATTAATGAGATTATTGGCAGCCATTTCTATCGGCAGGGCCTATTCGAAGTTGGTGACTGTTTTATAAGTGAGACTGAGGAATCAGAATCTGTGGTTGCTATGAAATCTCAGTTTCAGGAATTGTTTCGGATAGTTGAGGCAATGAAACATCGGAATCTAGAGCCAGCACTGAACTGGGTCGTGATTAACTCTGATAAACTAAAACCAAATGGTTCAGACATATTACTGAAACTTCACAGTTTGCAATTTGTCGAAATAGTGCAAAAGGGAAACAGAGACAGAGCTCTCCAGTATTCAAAAACTTTTCTTGCTCCTTTTGCTTCCAACTATATGGCTGAAATACAAAGGCTCATGGGGAGTCTTCTGTGGACTGGAAGACTTGAGTACTCCCCATACTCTCACTTATTATCACCAGCCATTTGGGACAAAGTTACCGGGGAGCTAACCAGGCAGTTCTGCAATATTCTGGGCCAGTCTTACAAGAGCCCATTGAGTGTGACCATGGCTGCAGGGATTCAGGGCTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGCAGGAAAAAGGCAGGAATGGCAGTCTATGAAGCAGTTACCTGTGCCAGTGGAGTTAAACCATGAGTTTCAATTCCATTCTATTTTTGTGTGTCCTGTGTCGAAGGAACAGTCAACTGAAGAAAATCCGCCTATGTTGATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTACGAAGATGTCAAAGAACGGGACAAAAGCTTTCAAGTGTCCATACTGCCCTTCCGATGTTGATTCAGCACAGTGCAGGCCACTAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

353

Amino Acids

39.96

Weight (kDa)

8.42

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	116 - 255	2.2e-36	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	295 - 336	5e-10	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AciI	CCGC	1 cut(s)	920
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	943
AgsI	TTSAA	3 cut(s)	534, 863, 1000
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	5 cut(s)	22, 104, 521, 679, 995
AluI	AGCT	5 cut(s)	22, 104, 521, 679, 995
Alw21I	GWGCWC	2 cut(s)	523, 951
Alw26I	GTCTC	2 cut(s)	302, 507
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	3 cut(s)	274, 706, 1043
ApeKI	GCWGC	2 cut(s)	255, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	2 cut(s)	182, 360
AspS9I	GGNCC	2 cut(s)	274, 706
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	302, 639
AsuII	TTCGAA	1 cut(s)	282
BanII	GRGCYC	2 cut(s)	523, 725
BbsI	GAAGAC	3 cut(s)	57, 590, 619
Bbv12I	GWGCWC	2 cut(s)	523, 951
BbvI	GCAGC	2 cut(s)	267, 730
BciT130I	CCWGG	1 cut(s)	685
BciVI	GTATCC	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	302, 507
BfaI	CTAG	2 cut(s)	146, 395
BfmI	CTRYAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	256, 744
BlsI	GCNGC	2 cut(s)	257, 745
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	2 cut(s)	673, 685
BmgT120I	GGNCC	2 cut(s)	274, 706
BmrFI	CCNGG	2 cut(s)	673, 685
BmrI	ACTGGG	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	3 cut(s)	57, 590, 619
BpmI	CTGGAG	2 cut(s)	194, 509
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	638, 758
BpuMI	CCSGG	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	201, 672, 738
Bse1I	ACTGG	5 cut(s)	416, 526, 613, 709, 839
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	3 cut(s)	201, 672, 738
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	62, 124, 303, 359
BseNI	ACTGG	5 cut(s)	416, 526, 613, 709, 839
BseXI	GCAGC	2 cut(s)	267, 730
BshFI	GGCC	3 cut(s)	276, 708, 1045
BsiHKAI	GWGCWC	2 cut(s)	523, 951
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	2 cut(s)	674, 1000
BsmAI	GTCTC	2 cut(s)	302, 507
BsmFI	GGGAC	2 cut(s)	674, 1000
BsnI	GGCC	3 cut(s)	276, 708, 1045
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	3 cut(s)	523, 725, 951
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	3 cut(s)	276, 708, 1045
BspCNI	CTCAG	4 cut(s)	61, 123, 304, 358
BspMAI	CTGCAG	1 cut(s)	748
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	5 cut(s)	416, 526, 613, 709, 839
BssECI	CCNNGG	3 cut(s)	201, 672, 738
BssT1I	CCWWGG	2 cut(s)	201, 738
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	4 cut(s)	296, 476, 903, 1038
Bst6I	CTCTTC	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	5 cut(s)	128, 402, 761, 956, 1043
BstDEI	CTNAG	5 cut(s)	48, 110, 152, 312, 345
BstDSI	CCRYGG	1 cut(s)	738
BstMAI	GTCTC	2 cut(s)	302, 507
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 685, 811, 955
BstNI	CCWGG	1 cut(s)	685
BstNSI	RCATGY	2 cut(s)	130, 947
BstSCI	CCNGG	2 cut(s)	671, 683
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	267, 730
BstV2I	GAAGAC	3 cut(s)	57, 590, 619
BstXI	CCANNNNNNTGG	2 cut(s)	568, 657
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	276, 708, 1045
BtgI	CCRYGG	1 cut(s)	738
BtsIMutI	CAGTG	3 cut(s)	404, 846, 1043
Cac8I	GCNNGC	5 cut(s)	128, 402, 761, 956, 1043
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	274, 706
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	6 cut(s)	127, 589, 739, 854, 936, 944
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	5 cut(s)	48, 110, 152, 312, 345
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
EciI	GGCGGA	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	2 cut(s)	201, 738
Eco24I	GRGCYC	2 cut(s)	523, 725
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	930
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	201, 738
EcoT38I	GRGCYC	2 cut(s)	523, 725
ErhI	CCWWGG	2 cut(s)	201, 738
FaeI	CATG	6 cut(s)	130, 592, 742, 857, 939, 947
FaqI	GGGAC	2 cut(s)	674, 1000
FatI	CATG	6 cut(s)	126, 588, 738, 853, 935, 943
Fnu4HI	GCNGC	2 cut(s)	256, 744
FriOI	GRGCYC	2 cut(s)	523, 725
Fsp4HI	GCNGC	2 cut(s)	256, 744
FspBI	CTAG	2 cut(s)	146, 395
GluI	GCNGC	2 cut(s)	256, 744
GsuI	CTGGAG	2 cut(s)	194, 509
HaeIII	GGCC	3 cut(s)	276, 708, 1045
HapII	CCGG	1 cut(s)	672
Hin1II	CATG	6 cut(s)	130, 592, 742, 857, 939, 947
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	8 cut(s)	44, 169, 317, 323, 391, 595, 751, 1028
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	302, 639
Hpy166II	GTNNAC	3 cut(s)	606, 906, 941
Hpy188I	TCNGA	7 cut(s)	322, 366, 390, 430, 454, 1021, 1058
Hpy188III	TCNNGA	5 cut(s)	173, 191, 353, 395, 418
Hpy8I	GTNNAC	3 cut(s)	606, 906, 941
HpyAV	CCTTC	4 cut(s)	127, 193, 889, 1026
HpyCH4III	ACNGT	4 cut(s)	296, 476, 903, 1038
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	130, 481, 499, 696, 746, 954, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 685, 811, 955
HpyF3I	CTNAG	5 cut(s)	48, 110, 152, 312, 345
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	130, 592, 742, 857, 939, 947
LmnI	GCTCC	3 cut(s)	109, 553, 676
Lsp1109I	GCAGC	2 cut(s)	267, 730
MaeI	CTAG	2 cut(s)	146, 395
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	5 cut(s)	12, 290, 667, 733, 828
MboII	GAAGA	6 cut(s)	57, 590, 624, 761, 923, 982
MhlI	GDGCHC	3 cut(s)	523, 725, 951
MluCI	AATT	5 cut(s)	237, 356, 482, 863, 1050
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	2 cut(s)	99, 585
MnlI	CCTC	3 cut(s)	307, 367, 777
MroXI	GAANNNNTTC	2 cut(s)	182, 360
MseI	TTAA	5 cut(s)	81, 92, 240, 423, 848
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	2 cut(s)	673, 685
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	4 cut(s)	554, 685, 811, 955
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	738
NlaIII	CATG	6 cut(s)	130, 592, 742, 857, 939, 947
NmuCI	GTSAC	2 cut(s)	290, 733
NspI	RCATGY	2 cut(s)	130, 947
NspV	TTCGAA	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	130
PciI	ACATGT	1 cut(s)	943
PdmI	GAANNNNTTC	2 cut(s)	182, 360
PfeI	GAWTC	7 cut(s)	44, 169, 317, 323, 391, 751, 1028
PkrI	GCNGC	2 cut(s)	257, 745
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PscI	ACATGT	1 cut(s)	943
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspPI	GGNCC	2 cut(s)	274, 706
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	81, 92, 240, 423, 848
SatI	GCNGC	2 cut(s)	256, 744
Sau96I	GGNCC	2 cut(s)	274, 706
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	2 cut(s)	673, 685
SduI	GDGCHC	3 cut(s)	523, 725, 951
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	617, 773
SmoI	CTYRAG	2 cut(s)	617, 773
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	5 cut(s)	237, 356, 482, 863, 1050
SsiI	CCGC	1 cut(s)	920
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	2 cut(s)	146, 395
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	671, 683
StyI	CCWWGG	2 cut(s)	201, 738
TaaI	ACNGT	4 cut(s)	296, 476, 903, 1038
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	282, 489, 893
TasI	AATT	5 cut(s)	237, 356, 482, 863, 1050
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	7 cut(s)	44, 169, 317, 323, 391, 751, 1028
Tru1I	TTAA	5 cut(s)	81, 92, 240, 423, 848
Tru9I	TTAA	5 cut(s)	81, 92, 240, 423, 848
TscAI	CASTG	3 cut(s)	411, 846, 1043
TseFI	GTSAC	2 cut(s)	290, 733
TseI	GCWGC	2 cut(s)	255, 743
Tsp45I	GTSAC	2 cut(s)	290, 733
TspDTI	ATGAA	6 cut(s)	17, 175, 353, 395, 797, 836
TspRI	CASTG	3 cut(s)	411, 846, 1043
VspI	ATTAAT	1 cut(s)	240
XbaI	TCTAGA	1 cut(s)	394
XceI	RCATGY	2 cut(s)	130, 947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XmnI	GAANNNNTTC	2 cut(s)	182, 360
XspI	CTAG	2 cut(s)	146, 395
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.