Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Reverse (-)

21908393 .. 21912955

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G210700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGCTGACCACCATTAAAGATGCATTTGATCGTGTTGCAAAGAAACAAAAACTGTCAAGCTCTAAAGCTCAGGAAGTGATCGATCAGATTGACCAAGAAATCCAGAAGACATTACAAAAGATCCAATCATCTAATGATTGCGAGTCTCAGGTTGATTATAAGTCTGCCCTTGCTGAACTTAAAGTGAAGCTAAATGATATTGCTCCACTCAGTCAGTTGGAAAGCACGCAGAAGGAACTGAATGGAGCACTTAGCAAGTATCCAAAGCATCTTGAGAAATTCTTCAATCCTGATATATCCAAGGCTTATAGAAACATTGACTTTGATACACACACAGTTAACGAGATAATTGGCAGCCATTTCTATCAGCAAGGCCTATTCGAAATTGGCGACTGTTTTAGAACTGAGGCTAAGGAACCAGAATCTGAAGCTGCTGTGAAATCTCAGTTTCAGGAAATGTTTCAGATAGTTGAAGCAATGAAACGTCGGAACCTAGAGCCAGCACTGAACTGGGCCGTGACTAACTCTGATAAACTCAAACCAAATGGATCGGACCTATTACTGAAACTTCAGAGTCTGCAATTTGTGGAAATACTGCAAAAGGGAAACAGAGATGGAGCTCTCCAGTATGCCAGAACTTATCTTGCTCCTTTTGCTTCTGACCATATGGCTGAAATTCAAAAGCTGATGGTGTGTCTTCTGTGGACCGGAAGGCTTGATCGCTCCCCATACTCTCACTTATTATCTCCAGCCAATTGGGACAAAGTGACTGGAGAGTTAACCAGGCAGTTCTGCAATCTTCTGGGGCAGTCTTACGAGAGCCCATTGAGTGTAACTATAGCTGCAGGGATTCAGGGGTTGCCACCTCTTCTCAAATTTATGAACGTAATGGCAGGAAAGAGACAGGAATGGCAGTCTATGAAGCAGTTACCTGTGCCAGTGGAGTTAGACCGTGAGTTTCAATTCCATTCTATATTTGTGTGTCCAGTGTCTAAGGAACAATCCACTGAAGAAAATCCGCCTATGTTGATGTCATGTGGACATGTGCTTTGCAAGCAGTCTATTACGAAGATGTCAAAGAACGGCACAAAATCCTTCAAGTGTCCATACTGTCCTTCCGATGTCAATTCAGCGCAGTGTAGGCCGCTCGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

387

Amino Acids

43.77

Weight (kDa)

7.03

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	1150
AciI	CCGC	2 cut(s)	1022, 1148
AclWI	GGATC	2 cut(s)	118, 559
AcsI	RAATTY	3 cut(s)	281, 678, 878
AcuI	CTGAAG	3 cut(s)	450, 557, 1032
AflIII	ACRYGT	1 cut(s)	1045
AgsI	TTSAA	5 cut(s)	289, 476, 683, 965, 1102
AjnI	CCWGG	1 cut(s)	785
AluBI	AGCT	8 cut(s)	7, 63, 71, 193, 434, 623, 688, 845
AluI	AGCT	8 cut(s)	7, 63, 71, 193, 434, 623, 688, 845
Alw21I	GWGCWC	2 cut(s)	253, 625
Alw26I	GTCTC	2 cut(s)	153, 898
AlwI	GGATC	2 cut(s)	118, 559
AlwNI	CAGNNNCTG	2 cut(s)	428, 580
AoxI	GGCC	3 cut(s)	376, 516, 1145
ApeKI	GCWGC	3 cut(s)	357, 434, 845
ApoI	RAATTY	3 cut(s)	281, 678, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	1035, 1067
Asp700I	GAANNNNTTC	2 cut(s)	284, 462
AspLEI	GCGC	1 cut(s)	1138
AspS9I	GGNCC	3 cut(s)	516, 556, 708
AsuII	TTCGAA	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	556, 708
BanII	GRGCYC	2 cut(s)	625, 827
BbsI	GAAGAC	2 cut(s)	116, 692
Bbv12I	GWGCWC	2 cut(s)	253, 625
BbvI	GCAGC	3 cut(s)	369, 421, 832
BccI	CCATC	2 cut(s)	611, 685
BceAI	ACGGC	2 cut(s)	503, 1102
BciT130I	CCWGG	1 cut(s)	787
BciVI	GTATCC	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	153, 898
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	2 cut(s)	840, 846
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	358, 435, 846, 1148
BlsI	GCNGC	4 cut(s)	359, 436, 847, 1149
Bme1390I	CCNGG	1 cut(s)	787
Bme18I	GGWCC	2 cut(s)	556, 708
BmgT120I	GGNCC	3 cut(s)	516, 556, 708
BmiI	GGNNCC	2 cut(s)	420, 494
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	13, 280
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	116, 692
BpmI	CTGGAG	3 cut(s)	611, 735, 795
Bpu10I	CCTNAGC	2 cut(s)	72, 414
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	710
Bse1I	ACTGG	5 cut(s)	518, 628, 778, 941, 989
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	787
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	5 cut(s)	86, 164, 226, 399, 461
BseNI	ACTGG	5 cut(s)	518, 628, 778, 941, 989
BseXI	GCAGC	3 cut(s)	369, 421, 832
BshFI	GGCC	3 cut(s)	378, 518, 1147
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	253, 625
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	2 cut(s)	153, 898
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	378, 518, 1147
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	253, 625, 827
Bsp143I	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
BspACI	CCGC	2 cut(s)	1022, 1148
BspANI	GGCC	3 cut(s)	378, 518, 1147
BspCNI	CTCAG	5 cut(s)	85, 163, 225, 400, 460
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	420, 494
BspMAI	CTGCAG	1 cut(s)	850
BspPI	GGATC	2 cut(s)	118, 559
BspT104I	TTCGAA	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	1150
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	5 cut(s)	518, 628, 778, 941, 989
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	5 cut(s)	57, 340, 398, 956, 1115
Bst6I	CTCTTC	1 cut(s)	876
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	230, 504, 1058
BstDEI	CTNAG	8 cut(s)	72, 150, 212, 254, 408, 414, 447, 996
BstHHI	GCGC	1 cut(s)	1138
BstKTI	GATC	6 cut(s)	34, 84, 88, 126, 554, 724
BstMAI	GTCTC	2 cut(s)	153, 898
BstMBI	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 1057, 1144
BstNI	CCWGG	1 cut(s)	787
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	2 cut(s)	840, 846
BstV1I	GCAGC	3 cut(s)	369, 421, 832
BstV2I	GAAGAC	2 cut(s)	116, 692
BstX2I	RGATCY	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	759
BstYI	RGATCY	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	378, 518, 1147
BsuTUI	ATCGAT	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	5 cut(s)	506, 948, 996, 1008, 1145
Cac8I	GCNNGC	3 cut(s)	230, 504, 1058
CaiI	CAGNNNCTG	2 cut(s)	428, 580
CfoI	GCGC	1 cut(s)	1138
Cfr13I	GGNCC	3 cut(s)	516, 556, 708
ClaI	ATCGAT	1 cut(s)	84
CviAII	CATG	2 cut(s)	1038, 1046
DdeI	CTNAG	8 cut(s)	72, 150, 212, 254, 408, 414, 447, 996
DpnI	GATC	6 cut(s)	33, 83, 87, 125, 553, 723
DpnII	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
EciI	GGCGGA	1 cut(s)	1011
Ecl136II	GAGCTC	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	625, 827
Eco47I	GGWCC	2 cut(s)	556, 708
Eco53kI	GAGCTC	1 cut(s)	623
Eco57I	CTGAAG	3 cut(s)	450, 557, 1032
EcoICRI	GAGCTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	625, 827
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	1041, 1049
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	2 cut(s)	1037, 1045
FauNDI	CATATG	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	358, 435, 846, 1148
FriOI	GRGCYC	2 cut(s)	625, 827
Fsp4HI	GCNGC	4 cut(s)	358, 435, 846, 1148
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	1137
GluI	GCNGC	4 cut(s)	358, 435, 846, 1148
GsuI	CTGGAG	3 cut(s)	611, 735, 795
HaeIII	GGCC	3 cut(s)	378, 518, 1147
HapII	CCGG	1 cut(s)	711
HhaI	GCGC	1 cut(s)	1138
Hin1II	CATG	2 cut(s)	1041, 1049
Hin6I	GCGC	1 cut(s)	1136
HinP1I	GCGC	1 cut(s)	1136
HincII	GTYRAC	2 cut(s)	343, 783
HindII	GTYRAC	2 cut(s)	343, 783
HinfI	GANTC	4 cut(s)	146, 425, 577, 853
HpaI	GTTAAC	2 cut(s)	343, 783
HpaII	CCGG	1 cut(s)	711
Hpy166II	GTNNAC	4 cut(s)	343, 708, 783, 1043
Hpy188III	TCNNGA	5 cut(s)	74, 106, 275, 293, 455
Hpy8I	GTNNAC	4 cut(s)	343, 708, 783, 1043
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	229, 708, 1108, 1128
HpyCH4III	ACNGT	5 cut(s)	57, 340, 398, 956, 1115
HpyCH4IV	ACGT	2 cut(s)	487, 888
HpyCH4V	TGCA	7 cut(s)	26, 41, 583, 601, 798, 848, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 1057, 1144
HpyF3I	CTNAG	8 cut(s)	72, 150, 212, 254, 408, 414, 447, 996
HpySE526I	ACGT	2 cut(s)	487, 888
Hsp92II	CATG	2 cut(s)	1041, 1049
HspAI	GCGC	1 cut(s)	1136
KspAI	GTTAAC	2 cut(s)	343, 783
Kzo9I	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
LmnI	GCTCC	6 cut(s)	4, 211, 248, 620, 655, 731
Lsp1109I	GCAGC	3 cut(s)	369, 421, 832
LweI	GCATC	2 cut(s)	13, 280
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	2 cut(s)	487, 888
MaeIII	GTNAC	4 cut(s)	520, 769, 835, 930
MalI	GATC	6 cut(s)	33, 83, 87, 125, 553, 723
MbiI	CCGCTC	1 cut(s)	1150
MboI	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
MboII	GAAGA	7 cut(s)	121, 277, 692, 794, 863, 1025, 1084
MfeI	CAATTG	1 cut(s)	757
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	3 cut(s)	253, 625, 827
MluCI	AATT	9 cut(s)	281, 351, 387, 584, 678, 757, 878, 965, 1129
MlyI	GAGTC	2 cut(s)	155, 586
MmeI	TCCRAC	2 cut(s)	201, 470
MnlI	CCTC	2 cut(s)	403, 879
Mph1103I	ATGCAT	1 cut(s)	28
MroXI	GAANNNNTTC	2 cut(s)	284, 462
MseI	TTAA	4 cut(s)	18, 183, 342, 782
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	3 cut(s)	656, 1057, 1144
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
NlaIII	CATG	2 cut(s)	1041, 1049
NlaIV	GGNNCC	2 cut(s)	420, 494
NmuCI	GTSAC	2 cut(s)	520, 769
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	1049
NspV	TTCGAA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	378
PciI	ACATGT	1 cut(s)	1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdmI	GAANNNNTTC	2 cut(s)	284, 462
PfeI	GAWTC	2 cut(s)	425, 853
PkrI	GCNGC	4 cut(s)	359, 436, 847, 1149
PleI	GAGTC	2 cut(s)	154, 585
PpsI	GAGTC	2 cut(s)	154, 585
PscI	ACATGT	1 cut(s)	1045
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	785
PspN4I	GGNNCC	2 cut(s)	420, 494
PspPI	GGNCC	3 cut(s)	516, 556, 708
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	2 cut(s)	428, 580
PsuI	RGATCY	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	625
SaqAI	TTAA	4 cut(s)	18, 183, 342, 782
SatI	GCNGC	4 cut(s)	358, 435, 846, 1148
Sau3AI	GATC	6 cut(s)	31, 81, 85, 123, 551, 721
Sau96I	GGNCC	3 cut(s)	516, 556, 708
SchI	GAGTC	2 cut(s)	155, 586
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	3 cut(s)	253, 625, 827
SfaNI	GCATC	2 cut(s)	13, 280
SfcI	CTRYAG	2 cut(s)	840, 846
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	2 cut(s)	556, 708
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	9 cut(s)	281, 351, 387, 584, 678, 757, 878, 965, 1129
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	1022, 1148
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	625
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	5 cut(s)	57, 340, 398, 956, 1115
TaiI	ACGT	2 cut(s)	490, 891
TaqI	TCGA	2 cut(s)	84, 384
TasI	AATT	9 cut(s)	281, 351, 387, 584, 678, 757, 878, 965, 1129
TauI	GCSGC	1 cut(s)	1150
TfiI	GAWTC	2 cut(s)	425, 853
Tru1I	TTAA	4 cut(s)	18, 183, 342, 782
Tru9I	TTAA	4 cut(s)	18, 183, 342, 782
TscAI	CASTG	5 cut(s)	513, 948, 996, 1015, 1145
TseFI	GTSAC	2 cut(s)	520, 769
TseI	GCWGC	3 cut(s)	357, 434, 845
Tsp45I	GTSAC	2 cut(s)	520, 769
TspDTI	ATGAA	3 cut(s)	497, 899, 938
TspRI	CASTG	5 cut(s)	513, 948, 996, 1015, 1145
VpaK11BI	GGWCC	2 cut(s)	556, 708
XapI	RAATTY	3 cut(s)	281, 678, 878
XceI	RCATGY	1 cut(s)	1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmnI	GAANNNNTTC	2 cut(s)	284, 462
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.