Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Reverse (-)

8007443 .. 8013758

Gene Structure 6316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGCTGACCACCATTAAAGATGCATTTGATCGTGTTACAAAGAAACAAAAGCTGTCAAGCTCTAAAGCTCAAGAAGTGTTCGATCTGATCGACAAAGAAATCAAGCAGACATTACAGAAGCTACAATCATCGAATGATCGTGAATCTCAGATTGATTGTAAGTCTGCTCTTGCTGAACTTAAAGCCAAGTTAAAAGATATAGCTCCACTCAGTCAGTTGGAAAGCACACAGAAGGAACTGAACCTAGCACTTAGCAAGTATCCAAAGATTCTGGAGAAATCCTGCATTCCTGATATATCCAAGGCTTATAGAAACATTGACTTTGATACCCACACAGTTAATGAGATAATTGGCAGCCATTTCTATCGGCAGGGCCTATTCGAAGTTGGTGACTGTTTTATAAATGAGACTGAGGAATCAGAATCTGCAGCCGCTATGAAATCTCAGTTTCAGGAATTGTTTGGGATAGTTGAAGCAATGAAACATCGGAATCTAGAGCCAGCACTGAACTGGGCCGTGACCAACTCTGATAAACTCAAACCAAATCGATCAGACCTATTACTGAAACTTCACAGTCTGCAATTTGTCGAAATAGTGCAAAACGGAAATAGAGATGGGGCTCTCCAGTATTCAAAAACTTGTCTTGCTCCCTTTGCTTCTGACCATATGGCTGAAATACAAAAGCTCATGGGGGGTCTTCTGTGGGCTGGAAGGCTTGAGCACTCCCCATACTCTCACTTATTATCACCAGCCAATTGGGACAAAGTGACGGGGGAGCTAACCAGGCAGTTCTGCAATATTCTGGGTCAGTCTTACAAGAGCCCATTGAGTGTGACAATGGAGGCAGGGATTCAGGGTTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGCAGGAAAGAGACAGGAATGGCAGTCTATGAAGCAGTTACCTTTACCAGTGGAGTTAGACCGTGAGTTTCATTTCCATTCTATTTTTGTGTGTCCAGTATCAAAGGAACAATCAACAGAAGAAAATCCGTTGATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTACGAAGATGTCAAAGAACGGTACAAAATCTTTCAAATGTCCATACTGTCCTTCCGATGTCAATTCAGCACAGTGTAGGCCGCTTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

385

Amino Acids

43.37

Weight (kDa)

7.54

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 289	2e-35	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	329 - 368	8.8e-10	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AciI	CCGC	2 cut(s)	435, 1142
AfaI	GTAC	1 cut(s)	1084
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	3 cut(s)	476, 636, 1096
AjnI	CCWGG	1 cut(s)	785
AluBI	AGCT	8 cut(s)	7, 55, 63, 71, 124, 206, 688, 781
AluI	AGCT	8 cut(s)	7, 55, 63, 71, 124, 206, 688, 781
Alw21I	GWGCWC	2 cut(s)	726, 1047
Alw26I	GTCTC	2 cut(s)	404, 898
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	376, 516, 1139
ApeKI	GCWGC	2 cut(s)	357, 431
AspS9I	GGNCC	2 cut(s)	376, 516
AsuHPI	GGTGA	2 cut(s)	404, 741
AsuII	TTCGAA	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	625, 827
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	726, 1047
BbvI	GCAGC	2 cut(s)	369, 443
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	787
BciVI	GTATCC	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	404, 898
BfaI	CTAG	2 cut(s)	248, 497
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	358, 432, 435, 1142
BlsI	GCNGC	4 cut(s)	359, 433, 436, 1143
Bme1390I	CCNGG	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	376, 516
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	2 cut(s)	296, 611
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	57, 740, 860
Bsa29I	ATCGAT	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	303
Bse1I	ACTGG	4 cut(s)	518, 628, 941, 989
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	787
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	4 cut(s)	164, 226, 405, 461
BseNI	ACTGG	4 cut(s)	518, 628, 941, 989
BseXI	GCAGC	2 cut(s)	369, 443
BshFI	GGCC	3 cut(s)	378, 518, 1141
BshVI	ATCGAT	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	726, 1047
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	2 cut(s)	404, 898
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	378, 518, 1141
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	4 cut(s)	625, 726, 827, 1047
Bsp143I	GATC	5 cut(s)	31, 85, 90, 139, 551
BspACI	CCGC	2 cut(s)	435, 1142
BspANI	GGCC	3 cut(s)	378, 518, 1141
BspCNI	CTCAG	4 cut(s)	163, 225, 406, 460
BspDI	ATCGAT	1 cut(s)	550
BspMAI	CTGCAG	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	518, 628, 941, 989
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	5 cut(s)	31, 85, 90, 139, 551
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	7 cut(s)	340, 398, 578, 956, 1082, 1109, 1134
Bst6I	CTCTTC	1 cut(s)	876
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	504, 1052
BstDEI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
BstKTI	GATC	5 cut(s)	34, 88, 93, 142, 554
BstMAI	GTCTC	2 cut(s)	404, 898
BstMBI	GATC	5 cut(s)	31, 85, 90, 139, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 787, 1051
BstNI	CCWGG	1 cut(s)	787
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	369, 443
BstV2I	GAAGAC	1 cut(s)	692
BstXI	CCANNNNNNTGG	1 cut(s)	759
Bsu15I	ATCGAT	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	378, 518, 1141
BsuTUI	ATCGAT	1 cut(s)	550
BtsIMutI	CAGTG	3 cut(s)	506, 948, 1139
Cac8I	GCNNGC	2 cut(s)	504, 1052
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	376, 516
ClaI	ATCGAT	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	1083
CviAII	CATG	3 cut(s)	691, 1032, 1040
CviQI	GTAC	1 cut(s)	1083
DdeI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
DpnI	GATC	5 cut(s)	33, 87, 92, 141, 553
DpnII	GATC	5 cut(s)	31, 85, 90, 139, 551
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	625, 827
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	625, 827
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	694, 1035, 1043
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	3 cut(s)	690, 1031, 1039
FauNDI	CATATG	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	358, 432, 435, 1142
FriOI	GRGCYC	2 cut(s)	625, 827
Fsp4HI	GCNGC	4 cut(s)	358, 432, 435, 1142
FspBI	CTAG	2 cut(s)	248, 497
GluI	GCNGC	4 cut(s)	358, 432, 435, 1142
GsuI	CTGGAG	2 cut(s)	296, 611
HaeIII	GGCC	3 cut(s)	378, 518, 1141
Hin1II	CATG	3 cut(s)	694, 1035, 1043
HinfI	GANTC	6 cut(s)	146, 271, 419, 425, 493, 853
HphI	GGTGA	2 cut(s)	404, 741
Hpy166II	GTNNAC	1 cut(s)	1037
Hpy188I	TCNGA	9 cut(s)	90, 153, 424, 492, 532, 556, 664, 1117, 1154
Hpy188III	TCNNGA	6 cut(s)	74, 143, 275, 293, 455, 497
Hpy8I	GTNNAC	1 cut(s)	1037
HpyAV	CCTTC	3 cut(s)	229, 708, 1122
HpyCH4III	ACNGT	7 cut(s)	340, 398, 578, 956, 1082, 1109, 1134
HpyCH4V	TGCA	7 cut(s)	26, 288, 431, 583, 601, 798, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 787, 1051
HpyF3I	CTNAG	5 cut(s)	150, 212, 254, 414, 447
Hsp92II	CATG	3 cut(s)	694, 1035, 1043
Kzo9I	GATC	5 cut(s)	31, 85, 90, 139, 551
LmnI	GCTCC	4 cut(s)	4, 211, 655, 778
Lsp1109I	GCAGC	2 cut(s)	369, 443
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	248, 497
MaeIII	GTNAC	6 cut(s)	37, 392, 520, 769, 835, 930
MalI	GATC	5 cut(s)	33, 87, 92, 141, 553
MboI	GATC	5 cut(s)	31, 85, 90, 139, 551
MboII	GAAGA	4 cut(s)	692, 863, 1025, 1078
MfeI	CAATTG	1 cut(s)	757
MhlI	GDGCHC	4 cut(s)	625, 726, 827, 1047
MluCI	AATT	5 cut(s)	351, 458, 584, 757, 1123
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	409, 838, 879
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	4 cut(s)	18, 183, 194, 342
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	3 cut(s)	656, 787, 1051
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	5 cut(s)	31, 85, 90, 139, 551
NlaIII	CATG	3 cut(s)	694, 1035, 1043
NmuCI	GTSAC	4 cut(s)	392, 520, 769, 835
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	1043
NspV	TTCGAA	1 cut(s)	384
PciI	ACATGT	1 cut(s)	1039
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	6 cut(s)	146, 271, 419, 425, 493, 853
PkrI	GCNGC	4 cut(s)	359, 433, 436, 1143
PscI	ACATGT	1 cut(s)	1039
PsiI	TTATAA	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	785
PspPI	GGNCC	2 cut(s)	376, 516
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	1084
RsaNI	GTAC	1 cut(s)	1083
SaqAI	TTAA	4 cut(s)	18, 183, 194, 342
SatI	GCNGC	4 cut(s)	358, 432, 435, 1142
Sau3AI	GATC	5 cut(s)	31, 85, 90, 139, 551
Sau96I	GGNCC	2 cut(s)	376, 516
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	4 cut(s)	625, 726, 827, 1047
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	72, 719, 875
SmoI	CTYRAG	3 cut(s)	72, 719, 875
Sse9I	AATT	5 cut(s)	351, 458, 584, 757, 1123
SsiI	CCGC	2 cut(s)	435, 1142
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	248, 497
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	7 cut(s)	340, 398, 578, 956, 1082, 1109, 1134
TaqI	TCGA	6 cut(s)	84, 93, 134, 384, 550, 591
TasI	AATT	5 cut(s)	351, 458, 584, 757, 1123
TauI	GCSGC	2 cut(s)	437, 1144
TfiI	GAWTC	6 cut(s)	146, 271, 419, 425, 493, 853
Tru1I	TTAA	4 cut(s)	18, 183, 194, 342
Tru9I	TTAA	4 cut(s)	18, 183, 194, 342
TscAI	CASTG	3 cut(s)	513, 948, 1139
TseFI	GTSAC	4 cut(s)	392, 520, 769, 835
TseI	GCWGC	2 cut(s)	357, 431
Tsp45I	GTSAC	4 cut(s)	392, 520, 769, 835
TspDTI	ATGAA	5 cut(s)	455, 497, 899, 938, 953
TspGWI	ACGGA	2 cut(s)	621, 1011
TspRI	CASTG	3 cut(s)	513, 948, 1139
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XspI	CTAG	2 cut(s)	248, 497
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.