Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Forward (+)

30016626 .. 30020034

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1305600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGCTGACTGCTATTAAAGATGGATTTGATCATGTGACAAAGAAACAAAAGCTGTCAAGCTCTAAAGCTCAAGAAGTGTTCGATCTGATCGACAAAGAAATGAAGCAGACTTTACAAAAGCTACAATCATATAATGGTTGTGAATCTCAGGTTGATTGTAAGTCTTCTCTTGCTGAACTTAAAGTCAAGTTAAAAGATTTAGCTCCACTCAGTCGGTTGGAAAGCACACAGAAGGAACTGAACCTAGCACTTAGCAAGTATCCAAAGATTCTGGAGAAATCCTTCATTCCTGATATATCCAAGGCTTATAGAAACATTGACTTTGATACCCACACGATTAATGAGATTATTGGCAGCCATTTCTATCGGCAGGGCCTATTCGAAGTTGGTGACTGTTTTATAAGTGAGACTGAGGAATCAGAATCTGTGGCTGCTATGAAATCTCAGTTTGAGGAATTGTTTCGGATAGTTGAGGCAATGAAACATCGGAATCTAGAGCCAGCACTGAACTGGGTCGTGACTAACTCTGATAAACTAAAACCAAATGGTTCAGACATATTACTGAAACTTCACAGTCTGCAATTTGTCGAAATAGTAAAGGGAAACAGAGAGAGAGCTCTCCAGTATTCAAAAACTTGTCTTGCTCCTTTTGCTTCCAACTATATGGCTGAAATACAAAAGCTCATGGGGAGTCTTCTGTGGACTGGAAGGCTTGAGTACTCCCCGTACTCTCACTTATTATCACCAGCCATTTGGGACAAAGTTAGTGGGGAGCTAACCAGGCAGTTCTGCAATATTCTGGGCCAGTCTTACAAGAGCCCATTGAGTTTGACCCTGGCTGCAGGGATTCAGGGCTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGCAGGAAAAAGGCAGGAATGGCAGTCTATGAAGCAGTTACCTGTGCCAGTGGAGTTAAACCAAGAGTTTCAATTCCATTCTATTTTTGTGTGTCCTGTGTCGAAGGAACAGTCGACTGAAGAAAATCCGCCTATGTTAATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTATGAAGATGTCAAAGAACGGGTCAAAAGCTTTCAAGTGTCCATACTGTCCTTCCGATGTTGATTCAGCACAGTGCAGGCCACTCGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

386

Amino Acids

43.64

Weight (kDa)

8.18

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 288	9.2e-36	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	328 - 369	4.8e-10	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	1004
AciI	CCGC	1 cut(s)	1019
AcuI	CTGAAG	1 cut(s)	1029
AfaI	GTAC	2 cut(s)	722, 731
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	3 cut(s)	633, 962, 1099
AjnI	CCWGG	2 cut(s)	782, 837
Alw21I	GWGCWC	2 cut(s)	622, 1050
Alw26I	GTCTC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	376, 805, 1142
ApeKI	GCWGC	3 cut(s)	357, 434, 842
ArsI	GACNNNNNNTTYG	4 cut(s)	986, 1018, 1070, 1102
AseI	ATTAAT	1 cut(s)	342
Asp700I	GAANNNNTTC	2 cut(s)	284, 462
AspS9I	GGNCC	2 cut(s)	376, 805
AsuHPI	GGTGA	2 cut(s)	404, 738
AsuII	TTCGAA	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	622, 824
BbsI	GAAGAC	2 cut(s)	159, 689
Bbv12I	GWGCWC	2 cut(s)	622, 1050
BbvI	GCAGC	3 cut(s)	369, 421, 829
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	1 cut(s)	1129
BciT130I	CCWGG	2 cut(s)	784, 839
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	2 cut(s)	248, 497
BfmI	CTRYAG	1 cut(s)	843
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	3 cut(s)	358, 435, 843
BlsI	GCNGC	3 cut(s)	359, 436, 844
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	2 cut(s)	784, 839
BmgT120I	GGNCC	2 cut(s)	376, 805
BmrFI	CCNGG	2 cut(s)	784, 839
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	159, 689
BpmI	CTGGAG	2 cut(s)	296, 608
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	57, 737, 857
BsaJI	CCNNGG	2 cut(s)	303, 837
Bse1I	ACTGG	5 cut(s)	518, 625, 712, 808, 938
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	784, 839
BseDI	CCNNGG	2 cut(s)	303, 837
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	4 cut(s)	164, 226, 405, 461
BseNI	ACTGG	5 cut(s)	518, 625, 712, 808, 938
BseXI	GCAGC	3 cut(s)	369, 421, 829
BshFI	GGCC	3 cut(s)	378, 807, 1144
BsiHKAI	GWGCWC	2 cut(s)	622, 1050
BslFI	GGGAC	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	3 cut(s)	378, 807, 1144
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	622, 824, 1050
Bsp143I	GATC	3 cut(s)	31, 85, 90
BspACI	CCGC	1 cut(s)	1019
BspANI	GGCC	3 cut(s)	378, 807, 1144
BspCNI	CTCAG	4 cut(s)	163, 225, 406, 460
BspMAI	CTGCAG	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	5 cut(s)	518, 625, 712, 808, 938
BssECI	CCNNGG	2 cut(s)	303, 837
BssMI	GATC	3 cut(s)	31, 85, 90
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	784, 839
Bst4CI	ACNGT	5 cut(s)	398, 578, 1002, 1112, 1137
Bst6I	CTCTTC	1 cut(s)	873
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	504, 860, 1055, 1142
BstDEI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
BstKTI	GATC	3 cut(s)	34, 88, 93
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	31, 85, 90
BstMWI	GCNNNNNNNGC	4 cut(s)	653, 784, 910, 1054
BstNI	CCWGG	2 cut(s)	784, 839
BstNSI	RCATGY	1 cut(s)	1046
BstSCI	CCNGG	2 cut(s)	782, 837
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	369, 421, 829
BstV2I	GAAGAC	2 cut(s)	159, 689
BstXI	CCANNNNNNTGG	2 cut(s)	667, 756
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	378, 807, 1144
BtsIMutI	CAGTG	3 cut(s)	506, 945, 1142
Cac8I	GCNNGC	4 cut(s)	504, 860, 1055, 1142
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	376, 805
Csp6I	GTAC	2 cut(s)	721, 730
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	4 cut(s)	35, 688, 1035, 1043
CviQI	GTAC	2 cut(s)	721, 730
DdeI	CTNAG	5 cut(s)	150, 212, 254, 414, 447
DpnI	GATC	3 cut(s)	33, 87, 92
DpnII	GATC	3 cut(s)	31, 85, 90
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
EciI	GGCGGA	1 cut(s)	1008
Ecl136II	GAGCTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	622, 824
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	1029
EcoICRI	GAGCTC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	782, 837
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	622, 824
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	38, 691, 1038, 1046
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	4 cut(s)	34, 687, 1034, 1042
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	3 cut(s)	358, 435, 843
FriOI	GRGCYC	2 cut(s)	622, 824
Fsp4HI	GCNGC	3 cut(s)	358, 435, 843
FspBI	CTAG	2 cut(s)	248, 497
GluI	GCNGC	3 cut(s)	358, 435, 843
GsuI	CTGGAG	2 cut(s)	296, 608
HaeIII	GGCC	3 cut(s)	378, 807, 1144
Hin1II	CATG	4 cut(s)	38, 691, 1038, 1046
HincII	GTYRAC	1 cut(s)	1005
HindII	GTYRAC	1 cut(s)	1005
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	8 cut(s)	146, 271, 419, 425, 493, 694, 850, 1127
HphI	GGTGA	2 cut(s)	404, 738
Hpy166II	GTNNAC	3 cut(s)	705, 1005, 1040
Hpy188I	TCNGA	8 cut(s)	90, 424, 468, 492, 532, 556, 1120, 1157
Hpy188III	TCNNGA	5 cut(s)	74, 275, 293, 497, 520
Hpy8I	GTNNAC	3 cut(s)	705, 1005, 1040
HpyAV	CCTTC	5 cut(s)	229, 295, 705, 988, 1125
HpyCH4III	ACNGT	5 cut(s)	398, 578, 1002, 1112, 1137
HpyCH4V	TGCA	5 cut(s)	583, 795, 845, 1053, 1140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	653, 784, 910, 1054
HpyF3I	CTNAG	5 cut(s)	150, 212, 254, 414, 447
Hsp92II	CATG	4 cut(s)	38, 691, 1038, 1046
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	31, 85, 90
LmnI	GCTCC	4 cut(s)	4, 211, 652, 775
Lsp1109I	GCAGC	3 cut(s)	369, 421, 829
MaeI	CTAG	2 cut(s)	248, 497
MaeIII	GTNAC	4 cut(s)	37, 392, 520, 927
MalI	GATC	3 cut(s)	33, 87, 92
MboI	GATC	3 cut(s)	31, 85, 90
MboII	GAAGA	5 cut(s)	159, 689, 860, 1022, 1081
MhlI	GDGCHC	3 cut(s)	622, 824, 1050
MluCI	AATT	3 cut(s)	458, 584, 962
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	201, 684
MnlI	CCTC	4 cut(s)	409, 448, 469, 876
MroXI	GAANNNNTTC	2 cut(s)	284, 462
MseI	TTAA	6 cut(s)	18, 183, 194, 342, 947, 1028
MspR9I	CCNGG	2 cut(s)	784, 839
MvaI	CCWGG	2 cut(s)	784, 839
MwoI	GCNNNNNNNGC	4 cut(s)	653, 784, 910, 1054
NdeII	GATC	3 cut(s)	31, 85, 90
NlaIII	CATG	4 cut(s)	38, 691, 1038, 1046
NmuCI	GTSAC	3 cut(s)	37, 392, 520
NspI	RCATGY	1 cut(s)	1046
NspV	TTCGAA	1 cut(s)	384
PciI	ACATGT	1 cut(s)	1042
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	2 cut(s)	284, 462
PfeI	GAWTC	7 cut(s)	146, 271, 419, 425, 493, 850, 1127
PkrI	GCNGC	3 cut(s)	359, 436, 844
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PscI	ACATGT	1 cut(s)	1042
PshBI	ATTAAT	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	782, 837
PspGI	CCWGG	2 cut(s)	782, 837
PspPI	GGNCC	2 cut(s)	376, 805
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	722, 731
RsaNI	GTAC	2 cut(s)	721, 730
SacI	GAGCTC	1 cut(s)	622
SalI	GTCGAC	1 cut(s)	1003
SaqAI	TTAA	6 cut(s)	18, 183, 194, 342, 947, 1028
SatI	GCNGC	3 cut(s)	358, 435, 843
Sau3AI	GATC	3 cut(s)	31, 85, 90
Sau96I	GGNCC	2 cut(s)	376, 805
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	784, 839
SduI	GDGCHC	3 cut(s)	622, 824, 1050
SfcI	CTRYAG	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	72, 716, 872
SmoI	CTYRAG	3 cut(s)	72, 716, 872
Sse9I	AATT	3 cut(s)	458, 584, 962
SsiI	CCGC	1 cut(s)	1019
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	248, 497
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	782, 837
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	5 cut(s)	398, 578, 1002, 1112, 1137
TaqI	TCGA	6 cut(s)	84, 93, 384, 591, 992, 1004
TasI	AATT	3 cut(s)	458, 584, 962
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	7 cut(s)	146, 271, 419, 425, 493, 850, 1127
Tru1I	TTAA	6 cut(s)	18, 183, 194, 342, 947, 1028
Tru9I	TTAA	6 cut(s)	18, 183, 194, 342, 947, 1028
TscAI	CASTG	3 cut(s)	513, 945, 1142
TseFI	GTSAC	3 cut(s)	37, 392, 520
TseI	GCWGC	3 cut(s)	357, 434, 842
Tsp45I	GTSAC	3 cut(s)	37, 392, 520
TspDTI	ATGAA	7 cut(s)	119, 277, 455, 497, 896, 935, 1082
TspRI	CASTG	3 cut(s)	513, 945, 1142
VspI	ATTAAT	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	1004
XmnI	GAANNNNTTC	2 cut(s)	284, 462
XspI	CTAG	2 cut(s)	248, 497
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.