Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Forward (+)

17809637 .. 17811659

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTAAAGAGCATTAAGGATGCGTTTGATCGTGTTGCGACGAAGCAGAAGCTCTCTTATAGCAAAACTAATGAGATTGTTCATATGTTGTCTCAAGAAATCGATAAGGCTTTGAGCATATTAGAGGAGACACCATCATCAGATACTATGCTTCTTGATCATAGATCTATCCTCGCTGATGTGAAGAAAGTGTTTATGGAGATTGCTCCAATCACTCAACTTGAAGCTACTGAGAAAGAGCTACATGCGGCTTTGACCAAGTACCCTAAAGTTCTTGAGAAACAGCTGAATCCAGACATATCAAAGGCTTATAGACACAATGTTGAGTTTGATACTCATATCGTTAACCAGATTATCGCCAACTTTTTCTACCGTCAAGGAATGTTTGACATTGGTGACTGTTTTGTTGCTGAAACTGGTGAATCTGAATGTTCTACAAGACAATCTTTCGTGGAGATGTATCGGATACTAGAAGCTATGAAGAGACGAGATCTTGAACCGGCTCTTAATTGGGCTGTTTCGAACTCTGACAAACTAAAGGAAGCAAGGTCTGATCTTGAGATGAAGCTTCATAGTCTACACTTTCTGGAAATAGCACGAGGCAAAAACTCCAAAGAAGCTATCGACTATGCGAGAAAGCATATCGCCACGTTTGCAGATAGCTGCCTCCCGGAGATCCAGAAGCTCATGTGTTCTCTCTTATGGAACAGAAAACTCGATAAATCACCATACTCCGAGTTTCTCTCCCCCGCTCTGTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACTGCAACCTACTCGGTGAATCATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGCACACAAGCGTTACCAGTACTATTGAAATACATGAACGTGGTGATGGCGAATAAGAAGCTTGATTGGCAGACCATGGAACAACTTCCTGTTGATGCGCAACTATCCGAGGAGTTTCAGTTTCATTCGGTGTTTGTCTGTCCAGTCTCTAAAGAACAGTCAAGTGATGATAACCCTCCGATGATGATGTCTTGTGGACATGTGCTTTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCTCTAAGTCGTCGTTCAAGTGTCCTTATTGCCCAACCGATGTAGACATCTCAAGGTGTAGGCAGTTGCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

388

Amino Acids

44.36

Weight (kDa)

6.29

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 291	5.2e-42	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	330 - 372	2.4e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	948
AccBSI	CCGCTC	1 cut(s)	755
AccI	GTMKAC	2 cut(s)	580, 1134
AciI	CCGC	3 cut(s)	251, 753, 848
AclWI	GGATC	1 cut(s)	673
AfaI	GTAC	3 cut(s)	266, 794, 870
AfiI	CCNNNNNNNGG	1 cut(s)	759
AflIII	ACRYGT	1 cut(s)	1048
AgsI	TTSAA	4 cut(s)	227, 500, 877, 1108
Alw26I	GTCTC	4 cut(s)	99, 125, 481, 1000
AlwI	GGATC	1 cut(s)	673
ApeKI	GCWGC	1 cut(s)	666
ArsI	GACNNNNNNTTYG	2 cut(s)	1038, 1070
Asp700I	GAANNNNTTC	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	949
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	5 cut(s)	410, 434, 720, 821, 904
AsuII	TTCGAA	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	854
BauI	CACGAG	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	2 cut(s)	145, 889
BcgI	CGANNNNNNTGC	4 cut(s)	777, 787, 811, 821
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	4 cut(s)	99, 125, 481, 1000
BfaI	CTAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	2 cut(s)	167, 493
BisI	GCNGC	2 cut(s)	252, 667
BlsI	GCNGC	2 cut(s)	253, 668
BmcAI	AGTACT	2 cut(s)	794, 870
Bme1390I	CCNGG	1 cut(s)	674
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	2 cut(s)	13, 934
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	4 cut(s)	81, 299, 581, 1126
BpuMI	CCSGG	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	924, 957
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	424, 866, 992
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	924, 957
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	424, 866, 992
BseRI	GAGGAG	2 cut(s)	143, 974
BseSI	GKGCMC	1 cut(s)	854
BseXI	GCAGC	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	503, 674
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	4 cut(s)	99, 125, 481, 1000
BsmBI	CGTCTC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	3 cut(s)	251, 753, 848
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	105
BspPI	GGATC	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	424, 866, 992
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	924, 957
BssMI	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	600
Bst4CI	ACNGT	5 cut(s)	377, 404, 792, 841, 1008
Bst6I	CTCTTC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	850, 1061
BstDEI	CTNAG	2 cut(s)	234, 1095
BstDSI	CCRYGG	1 cut(s)	924
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	949
BstKTI	GATC	7 cut(s)	34, 163, 170, 496, 559, 681, 1071
BstMAI	GTCTC	4 cut(s)	99, 125, 481, 1000
BstMBI	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 916, 1060
BstNSI	RCATGY	2 cut(s)	251, 1052
BstSCI	CCNGG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	854
BstV1I	GCAGC	1 cut(s)	653
BstX2I	RGATCY	3 cut(s)	167, 493, 678
BstYI	RGATCY	3 cut(s)	167, 493, 678
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	850, 1061
CfoI	GCGC	1 cut(s)	949
Cfr10I	RCCGGY	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	265, 793, 869
CviAII	CATG	5 cut(s)	248, 691, 883, 925, 1049
CviQI	GTAC	3 cut(s)	265, 793, 869
DdeI	CTNAG	2 cut(s)	234, 1095
DpnI	GATC	7 cut(s)	33, 162, 169, 495, 558, 680, 1070
DpnII	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	924
EcoT14I	CCWWGG	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	5 cut(s)	251, 694, 886, 928, 1052
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	5 cut(s)	247, 690, 882, 924, 1048
FauI	CCCGC	2 cut(s)	760, 841
FauNDI	CATATG	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	2 cut(s)	580, 1134
Fnu4HI	GCNGC	2 cut(s)	252, 667
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	252, 667
FspBI	CTAG	1 cut(s)	473
FspI	TGCGCA	1 cut(s)	948
GlaI	GCGC	1 cut(s)	948
GluI	GCNGC	2 cut(s)	252, 667
HapII	CCGG	2 cut(s)	503, 674
HhaI	GCGC	1 cut(s)	949
Hin1II	CATG	5 cut(s)	251, 694, 886, 928, 1052
Hin6I	GCGC	1 cut(s)	947
HinP1I	GCGC	1 cut(s)	947
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	569, 908
HinfI	GANTC	3 cut(s)	292, 425, 812
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	503, 674
HphI	GGTGA	5 cut(s)	410, 434, 720, 821, 904
Hpy166II	GTNNAC	4 cut(s)	349, 581, 1046, 1135
Hpy188I	TCNGA	9 cut(s)	145, 430, 468, 532, 556, 739, 820, 958, 1029
Hpy188III	TCNNGA	8 cut(s)	98, 158, 278, 296, 497, 560, 590, 682
Hpy8I	GTNNAC	4 cut(s)	349, 581, 1046, 1135
Hpy99I	CGWCG	2 cut(s)	46, 1105
HpyCH4III	ACNGT	5 cut(s)	377, 404, 792, 841, 1008
HpyCH4IV	ACGT	2 cut(s)	653, 888
HpyCH4V	TGCA	5 cut(s)	659, 770, 798, 1059, 1159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 916, 1060
HpyF3I	CTNAG	2 cut(s)	234, 1095
HpySE526I	ACGT	2 cut(s)	653, 888
Hsp92II	CATG	5 cut(s)	251, 694, 886, 928, 1052
HspAI	GCGC	1 cut(s)	947
Ksp22I	TGATCA	1 cut(s)	160
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
LmnI	GCTCC	2 cut(s)	4, 214
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	13, 934
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	2 cut(s)	653, 888
MaeIII	GTNAC	3 cut(s)	398, 841, 861
MalI	GATC	7 cut(s)	33, 162, 169, 495, 558, 680, 1070
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
MboII	GAAGA	2 cut(s)	199, 496
MflI	RGATCY	3 cut(s)	167, 493, 678
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	1 cut(s)	511
MnlI	CCTC	6 cut(s)	121, 185, 596, 680, 952, 1035
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	3 cut(s)	18, 348, 510
MslI	CAYNNNNRTG	1 cut(s)	887
MspA1I	CMGCKG	2 cut(s)	289, 848
MspI	CCGG	2 cut(s)	503, 674
MspR9I	CCNGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	656, 916, 1060
NciI	CCSGG	1 cut(s)	674
NcoI	CCATGG	1 cut(s)	924
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
NlaIII	CATG	5 cut(s)	251, 694, 886, 928, 1052
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	948
NspI	RCATGY	2 cut(s)	251, 1052
NspV	TTCGAA	1 cut(s)	524
PciI	ACATGT	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	3 cut(s)	292, 425, 812
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	253, 668
PscI	ACATGT	1 cut(s)	1048
PsuI	RGATCY	3 cut(s)	167, 493, 678
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	3 cut(s)	266, 794, 870
RsaNI	GTAC	3 cut(s)	265, 793, 869
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	3 cut(s)	18, 348, 510
SatI	GCNGC	2 cut(s)	252, 667
Sau3AI	GATC	7 cut(s)	31, 160, 167, 493, 556, 678, 1068
ScaI	AGTACT	2 cut(s)	794, 870
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	2 cut(s)	13, 934
SfuI	TTCGAA	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	4 cut(s)	96, 278, 560, 1141
SmoI	CTYRAG	4 cut(s)	96, 278, 560, 1141
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	3 cut(s)	251, 753, 848
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	5 cut(s)	377, 404, 792, 841, 1008
TaiI	ACGT	2 cut(s)	656, 891
TaqI	TCGA	4 cut(s)	105, 524, 627, 720
TasI	AATT	1 cut(s)	511
TatI	WGTACW	2 cut(s)	792, 868
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	292, 425, 812
Tru1I	TTAA	3 cut(s)	18, 348, 510
Tru9I	TTAA	3 cut(s)	18, 348, 510
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	666
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	6 cut(s)	74, 497, 563, 581, 899, 962
XceI	RCATGY	2 cut(s)	251, 1052
XmiI	GTMKAC	2 cut(s)	580, 1134
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	1 cut(s)	473
ZrmI	AGTACT	2 cut(s)	794, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.