Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Forward (+)

11137026 .. 11141738

Gene Structure 4713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGCTGATTAAAGATGCATTTGAACGTGTTACGAAGAAACAAAAGCTGTCATGCTCCAAAAATCAAGAAGTTCTTGATCTGATTGACCAAGAAATCAAGCAGACGTTACAGAAAATACAGTCTAATGAGTGTGCATCTCAGGTTGATTTTAAATCTACCATTGCTGAACTCAAAAACAAGTTAAAAGACATTGCACCTGTCAGTCAGACCGAAAGCACTCAGAAGGAACTGAATCTGGCATTGAGCAAGTACCCAAAGCTTCTCGAGAAATCATTCAATCCTGATATAGCCAAGGCTTATAGAAACATCGAGTTTGATGCTCATACGGTTAATGAGATAATAGGCAGTCATTTCTATAGGCAGGGCCTTTTCGAACTTGGAGACTGTTTTCTAAGTGAGGCTGGAGAACCAGAATCTACAGCTGCTATGAAATCTCAGTTTCAGGAGATGTTTCAGATAGTTGAAGCAATGAAATGTCAGAACTTAGAGCCAGCACTGAAGTGGGCCATTGCTAATTCTGATAAACTCAAACCAAATGGATCAGATCTACTACTGCAACTTCACAGTCTACAGTTTATGGGTATATTGCAGAAGGGAGACAAATATGGAGCTATTGCTTATGCCAAAACTTGTCTTGCTCCTTTTGCTTCTGACCATATGGCTGAATTTCAGAAGCTCATGGTATCTATTTTATGGGCTGGAAAGCTTGATATGTCACCATACTTTCACCTATTATCCAAAGCGAATTGGGAGAAAGTTATTGGGGGGCTAACTAGGCAGTTCTGCAATATTCTTGGCCAGTCTTATGAGAGCCCATTGAGCATGACTATAGCTGCTGGAGTTCAGGGGTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGTTGGGAAGAAAAATGAATGGCAGACTATGAAGCAGTTGCCTGTGCCGGTGGAGTTGGACCGTGAGTTTCAGTTCCATTCTATTTTTGTTTGTCCGGTGTCCAAGGAACAAGCAACTGATGAAAATCCCCCTATGTTGATGTCATGTGGACATGTGCTCTGCAAGCAGTCTATTACAAAGATGTCAAAGAACGGCACAAAAACCTTCAAATGTCCTTACTGTCCTTCCGATATCGATTCAGCACAGTGTAGGCAGCTCCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

384

Amino Acids

43.22

Weight (kDa)

7.5

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	147 - 286	6.7e-32	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	326 - 367	2.3e-10	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	254
AflIII	ACRYGT	2 cut(s)	28, 1036
AgsI	TTSAA	4 cut(s)	26, 280, 467, 1093
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	9 cut(s)	7, 49, 262, 425, 614, 679, 709, 836, 1141
AluI	AGCT	9 cut(s)	7, 49, 262, 425, 614, 679, 709, 836, 1141
Alw21I	GWGCWC	1 cut(s)	1044
Alw26I	GTCTC	2 cut(s)	378, 594
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	367, 507, 799
ApeKI	GCWGC	3 cut(s)	425, 836, 1138
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	367, 507, 943
AsuHPI	GGTGA	2 cut(s)	711, 722
AsuII	TTCGAA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	943
BalI	TGGCCA	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	1044
BbvI	GCAGC	2 cut(s)	412, 823
BceAI	ACGGC	1 cut(s)	1093
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BcoDI	GTCTC	2 cut(s)	378, 594
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	4 cut(s)	358, 420, 572, 831
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	426, 837, 1139
BlsI	GCNGC	3 cut(s)	427, 838, 1140
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	367, 507, 943
BmsI	GCATC	3 cut(s)	7, 146, 310
BpmI	CTGGAG	2 cut(s)	426, 861
Bpu14I	TTCGAA	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	851
Bsa29I	ATCGAT	1 cut(s)	1119
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaJI	CCNNGG	2 cut(s)	294, 987
BsaWI	WCCGGW	1 cut(s)	979
Bse118I	RCCGGY	1 cut(s)	931
Bse1I	ACTGG	1 cut(s)	802
Bse3DI	GCAATG	4 cut(s)	162, 192, 477, 510
Bse8I	GATNNNNATC	1 cut(s)	1008
BseCI	ATCGAT	1 cut(s)	1119
BseDI	CCNNGG	2 cut(s)	294, 987
BseJI	GATNNNNATC	1 cut(s)	1008
BseMI	GCAATG	4 cut(s)	162, 192, 477, 510
BseMII	CTCAG	3 cut(s)	155, 236, 452
BseNI	ACTGG	1 cut(s)	802
BseXI	GCAGC	2 cut(s)	412, 823
BshFI	GGCC	3 cut(s)	369, 509, 801
BshVI	ATCGAT	1 cut(s)	1119
BsiHKAI	GWGCWC	1 cut(s)	1044
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	932, 980
BsmAI	GTCTC	2 cut(s)	378, 594
BsnI	GGCC	3 cut(s)	369, 509, 801
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	818, 1044
Bsp143I	GATC	3 cut(s)	79, 542, 547
BspANI	GGCC	3 cut(s)	369, 509, 801
BspCNI	CTCAG	3 cut(s)	154, 235, 451
BspDI	ATCGAT	1 cut(s)	1119
BspPI	GGATC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	375
BsrDI	GCAATG	4 cut(s)	162, 192, 477, 510
BsrFI	RCCGGY	1 cut(s)	931
BsrI	ACTGG	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	2 cut(s)	294, 987
BssMI	GATC	3 cut(s)	79, 542, 547
BssT1I	CCWWGG	2 cut(s)	294, 987
Bst4CI	ACNGT	8 cut(s)	123, 331, 389, 569, 576, 947, 1106, 1131
Bst6I	CTCTTC	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	495, 1049
BstDEI	CTNAG	5 cut(s)	141, 222, 395, 438, 487
BstKTI	GATC	3 cut(s)	82, 545, 550
BstMAI	GTCTC	2 cut(s)	378, 594
BstMBI	GATC	3 cut(s)	79, 542, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 778, 822, 1048
BstNSI	RCATGY	1 cut(s)	1040
BstSFI	CTRYAG	4 cut(s)	358, 420, 572, 831
BstV1I	GCAGC	2 cut(s)	412, 823
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
Bsu15I	ATCGAT	1 cut(s)	1119
BsuRI	GGCC	3 cut(s)	369, 509, 801
BsuTUI	ATCGAT	1 cut(s)	1119
BtsIMutI	CAGTG	2 cut(s)	497, 1136
Cac8I	GCNNGC	2 cut(s)	495, 1049
Cfr10I	RCCGGY	1 cut(s)	931
Cfr13I	GGNCC	3 cut(s)	367, 507, 943
ClaI	ATCGAT	1 cut(s)	1119
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	5 cut(s)	54, 682, 826, 1029, 1037
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	5 cut(s)	141, 222, 395, 438, 487
DpnI	GATC	3 cut(s)	81, 544, 549
DpnII	GATC	3 cut(s)	79, 542, 547
DraI	TTTAAA	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	294, 987
Eco24I	GRGCYC	1 cut(s)	818
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	1117
EcoT14I	CCWWGG	2 cut(s)	294, 987
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	818
ErhI	CCWWGG	2 cut(s)	294, 987
FaeI	CATG	5 cut(s)	57, 685, 829, 1032, 1040
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	5 cut(s)	53, 681, 825, 1028, 1036
FauNDI	CATATG	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	426, 837, 1139
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	3 cut(s)	426, 837, 1139
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	3 cut(s)	426, 837, 1139
GsuI	CTGGAG	2 cut(s)	426, 861
HaeIII	GGCC	3 cut(s)	369, 509, 801
HapII	CCGG	2 cut(s)	932, 980
Hin1II	CATG	5 cut(s)	57, 685, 829, 1032, 1040
HindIII	AAGCTT	2 cut(s)	260, 707
HinfI	GANTC	3 cut(s)	235, 416, 1121
HpaII	CCGG	2 cut(s)	932, 980
HphI	GGTGA	2 cut(s)	711, 722
Hpy166II	GTNNAC	2 cut(s)	572, 1034
Hpy188III	TCNNGA	6 cut(s)	68, 77, 266, 268, 284, 446
Hpy8I	GTNNAC	2 cut(s)	572, 1034
HpyAV	CCTTC	4 cut(s)	220, 589, 1099, 1119
HpyCH4III	ACNGT	8 cut(s)	123, 331, 389, 569, 576, 947, 1106, 1131
HpyCH4IV	ACGT	2 cut(s)	28, 107
HpyCH4V	TGCA	7 cut(s)	20, 137, 197, 559, 592, 789, 1047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 778, 822, 1048
HpyF3I	CTNAG	5 cut(s)	141, 222, 395, 438, 487
HpySE526I	ACGT	2 cut(s)	28, 107
Hsp92II	CATG	5 cut(s)	57, 685, 829, 1032, 1040
Kzo9I	GATC	3 cut(s)	79, 542, 547
LmnI	GCTCC	5 cut(s)	4, 62, 611, 646, 1146
Lsp1109I	GCAGC	2 cut(s)	412, 823
LweI	GCATC	3 cut(s)	7, 146, 310
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	28, 107
MaeIII	GTNAC	3 cut(s)	31, 108, 717
MalI	GATC	3 cut(s)	81, 544, 549
MboI	GATC	3 cut(s)	79, 542, 547
MboII	GAAGA	3 cut(s)	49, 854, 904
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	818, 1044
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	3 cut(s)	517, 668, 748
MluNI	TGGCCA	1 cut(s)	801
MmeI	TCCRAC	1 cut(s)	921
MnlI	CCTC	2 cut(s)	394, 870
Mox20I	TGGCCA	1 cut(s)	801
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	4 cut(s)	12, 153, 185, 333
MslI	CAYNNNNRTG	1 cut(s)	502
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	932, 980
MwoI	GCNNNNNNNGC	4 cut(s)	647, 778, 822, 1048
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	3 cut(s)	79, 542, 547
NlaIII	CATG	5 cut(s)	57, 685, 829, 1032, 1040
NmuCI	GTSAC	1 cut(s)	717
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	1040
NspV	TTCGAA	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	266
PciI	ACATGT	1 cut(s)	1036
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	235, 416, 1121
PkrI	GCNGC	3 cut(s)	427, 838, 1140
PscI	ACATGT	1 cut(s)	1036
PspPI	GGNCC	3 cut(s)	367, 507, 943
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	12, 153, 185, 333
SatI	GCNGC	3 cut(s)	426, 837, 1139
Sau3AI	GATC	3 cut(s)	79, 542, 547
Sau96I	GGNCC	3 cut(s)	367, 507, 943
SduI	GDGCHC	2 cut(s)	818, 1044
SfaNI	GCATC	3 cut(s)	7, 146, 310
SfcI	CTRYAG	4 cut(s)	358, 420, 572, 831
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	266, 866
SmoI	CTYRAG	2 cut(s)	266, 866
Sse9I	AATT	3 cut(s)	517, 668, 748
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	294, 987
TaaI	ACNGT	8 cut(s)	123, 331, 389, 569, 576, 947, 1106, 1131
TaiI	ACGT	2 cut(s)	31, 110
TaqI	TCGA	4 cut(s)	267, 312, 375, 1119
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	517, 668, 748
TfiI	GAWTC	3 cut(s)	235, 416, 1121
Tru1I	TTAA	4 cut(s)	12, 153, 185, 333
Tru9I	TTAA	4 cut(s)	12, 153, 185, 333
TscAI	CASTG	2 cut(s)	504, 1136
TseFI	GTSAC	1 cut(s)	717
TseI	GCWGC	3 cut(s)	425, 836, 1138
Tsp45I	GTSAC	1 cut(s)	717
TspDTI	ATGAA	6 cut(s)	446, 488, 890, 915, 929, 1020
TspRI	CASTG	2 cut(s)	504, 1136
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	1 cut(s)	668
XceI	RCATGY	1 cut(s)	1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XhoI	CTCGAG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	777
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.