AT2G23110

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014508
Physical Location & Seq
Forward (+)
9840456 .. 9841366
911 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23110.1

Sequence Viewer

Length: 279 bp
ATGGAGGATCAGAAAAAGCCACCAACGACCGAGCAAGAAGTGAAAGAAGTTAAAAACGACGACCTCGAGTCTATCAAGACCCCATACTTGGACTATGATAACTTGGAAGATTACAAGATGAAAGGTTACGGAGCACAAGGCCACCAAGAGCCTAAACTCGGTATGGGAGGTGGAGCCACCGATGCTCCCACTCCTTCAGGCGGTCTTGGACGCGGTGGAGGCGCTGCATCGACGGATCTTTCTTCTACCGATGCGATTAACCGTCAGGGCGTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

92

Amino Acids

9.71

Weight (kDa)

4.59

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 4 - 89 4.1e-26 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 201, 213
AclWI GGATC 2 cut(s) 15, 243
AcuI CTGAAG 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 88, 158, 200
AhdI GACNNNNNGTC 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 2 cut(s) 15, 243
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 3 cut(s) 172, 236, 241
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 158, 200
BseLI CCNNNNNNNGG 3 cut(s) 88, 158, 200
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 158, 200
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 7, 235
BspACI CCGC 2 cut(s) 201, 213
BspANI GGCC 1 cut(s) 141
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 2 cut(s) 15, 243
BssMI GATC 2 cut(s) 7, 235
Bst4CI ACNGT 1 cut(s) 263
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 10, 238
BstMBI GATC 2 cut(s) 7, 235
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 182, 219
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 141
CfoI GCGC 1 cut(s) 224
CseI GACGC 1 cut(s) 219
CviJI RGCY 4 cut(s) 19, 141, 151, 176
CviKI_1 RGCY 4 cut(s) 19, 141, 151, 176
DpnI GATC 2 cut(s) 9, 237
DpnII GATC 2 cut(s) 7, 235
DriI GACNNNNNGTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 65
FaiI YATR 3 cut(s) 85, 96, 164
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 224
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 62, 235
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 219
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 7, 235
LmnI GCTCC 3 cut(s) 131, 173, 190
LpnPI CCDG 2 cut(s) 183, 251
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 3 cut(s) 172, 236, 241
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 9, 237
MboI GATC 2 cut(s) 7, 235
MboII GAAGA 2 cut(s) 119, 234
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 136
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 74, 161, 212
MseI TTAA 2 cut(s) 51, 258
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 182, 219
NdeII GATC 2 cut(s) 7, 235
NlaIV GGNNCC 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 65
PsuI RGATCY 1 cut(s) 235
SaqAI TTAA 2 cut(s) 51, 258
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 7, 235
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 66, 127, 172
SfaNI GCATC 3 cut(s) 172, 236, 241
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SsiI CCGC 2 cut(s) 201, 213
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 2 cut(s) 66, 230
TaqII GACCGA 1 cut(s) 44
Tru1I TTAA 2 cut(s) 51, 258
Tru9I TTAA 2 cut(s) 51, 258
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 3 cut(s) 144, 248, 264
XhoI CTCGAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.