Rh2BG204800

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014508
Physical Location & Seq
Reverse (-)
18958882 .. 18960199
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG204800.1

Sequence Viewer

Length: 270 bp
ATGGCGAGCAAGCCAGGAGGAGAGAGAAAGCCAGCAGCTGATCAGGGAAGCGATGCGAAGTTAGAGCAGGCAATGAAGGACAGTCCGTACGTCCAATCCGATAACTTGGAGGATTACAAGCGCCAGGGGTACGGAACCGAGGGACATCAGCAGGTCCAGCCGGGTCGGGGCGCCGGATCCACCGATGCTCCGACTGTTTCCGGGGCTAATGTTTCCTCCAAGGCGGATGTTACCGCCACTGAAACTATCAACCGCCAAGGAGTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

89

Amino Acids

9.29

Weight (kDa)

5.23

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 9 - 86 1.2e-29 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 3 cut(s) 224, 234, 253
AclWI GGATC 2 cut(s) 171, 184
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 89, 131
AfiI CCNNNNNNNGG 1 cut(s) 167
AjnI CCWGG 2 cut(s) 13, 123
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 2 cut(s) 171, 184
AlwNI CAGNNNCTG 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 123, 173
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 2 cut(s) 162, 202
AvaII GGWCC 1 cut(s) 154
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 15, 125
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 2 cut(s) 162, 202
BfoI RGCGCY 2 cut(s) 124, 174
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 4 cut(s) 15, 125, 162, 202
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 3 cut(s) 136, 172, 178
BmrFI CCNGG 4 cut(s) 15, 125, 162, 202
BmsI GCATC 2 cut(s) 43, 175
BpuMI CCSGG 2 cut(s) 162, 202
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 5 cut(s) 124, 138, 201, 219, 256
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 2 cut(s) 15, 125
BseDI CCNNGG 5 cut(s) 124, 138, 201, 219, 256
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 3 cut(s) 161, 174, 201
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 40, 176
BspACI CCGC 3 cut(s) 224, 234, 253
BspLI GGNNCC 3 cut(s) 136, 172, 178
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 2 cut(s) 171, 184
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 5 cut(s) 124, 138, 201, 219, 256
BssMI GATC 2 cut(s) 40, 176
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 219, 256
Bst2UI CCWGG 2 cut(s) 15, 125
Bst4CI ACNGT 2 cut(s) 83, 196
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 7, 11, 33, 69
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 2 cut(s) 124, 174
BstHHI GCGC 2 cut(s) 123, 173
BstKTI GATC 2 cut(s) 43, 179
BstMBI GATC 2 cut(s) 40, 176
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 2 cut(s) 15, 125
BstSCI CCNGG 4 cut(s) 13, 123, 160, 200
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 4 cut(s) 7, 11, 33, 69
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 2 cut(s) 123, 173
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 88, 130
CviJI RGCY 5 cut(s) 13, 31, 38, 160, 206
CviKI_1 RGCY 5 cut(s) 13, 31, 38, 160, 206
CviQI GTAC 2 cut(s) 88, 130
DinI GGCGCC 1 cut(s) 172
DpnI GATC 2 cut(s) 42, 178
DpnII GATC 2 cut(s) 40, 176
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 219, 256
Eco47I GGWCC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 13, 123
EcoT14I CCWWGG 2 cut(s) 219, 256
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 2 cut(s) 219, 256
FaqI GGGAC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 36
GlaI GCGC 2 cut(s) 122, 172
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 2 cut(s) 124, 174
HapII CCGG 3 cut(s) 161, 174, 201
HhaI GCGC 2 cut(s) 123, 173
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 2 cut(s) 121, 171
HinP1I GCGC 2 cut(s) 121, 171
HpaII CCGG 3 cut(s) 161, 174, 201
Hpy188I TCNGA 2 cut(s) 100, 192
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 83, 196
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 2 cut(s) 121, 171
KasI GGCGCC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 176
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 43, 175
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 42, 178
MboI GATC 2 cut(s) 40, 176
MflI RGATCY 1 cut(s) 176
MluCI AATT 1 cut(s) 265
Mly113I GGCGCC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 4 cut(s) 11, 103, 133, 226
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 161, 174, 201
MspR9I CCNGG 4 cut(s) 15, 125, 162, 202
MvaI CCWGG 2 cut(s) 15, 125
MwoI GCNNNNNNNGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 171
NciI CCSGG 2 cut(s) 162, 202
NdeII GATC 2 cut(s) 40, 176
NlaIV GGNNCC 3 cut(s) 136, 172, 178
PcsI WCGNNNNNNNCGW 1 cut(s) 96
Pfl23II CGTACG 1 cut(s) 87
PkrI GCNGC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 13, 123
PspGI CCWGG 2 cut(s) 13, 123
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 136, 172, 178
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 89, 131
RsaNI GTAC 2 cut(s) 88, 130
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 40, 176
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 4 cut(s) 15, 125, 162, 202
SetI ASST 3 cut(s) 40, 93, 156
SfaNI GCATC 2 cut(s) 43, 175
SfoI GGCGCC 1 cut(s) 172
SinI GGWCC 1 cut(s) 154
Sse9I AATT 1 cut(s) 265
SsiI CCGC 3 cut(s) 224, 234, 253
SspDI GGCGCC 1 cut(s) 170
StyD4I CCNGG 4 cut(s) 13, 123, 160, 200
StyI CCWWGG 2 cut(s) 219, 256
TaaI ACNGT 2 cut(s) 83, 196
TaiI ACGT 1 cut(s) 93
TasI AATT 1 cut(s) 265
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 244
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 75, 147
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.