AT2G33690

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014508
Physical Location & Seq
Forward (+)
14252154 .. 14252643
490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33690.1

Sequence Viewer

Length: 228 bp
ATGTCAGGAAATATGTCGAAGAGTGAAGAGAAACAAGAGTTGCCACTAGAAACAAGTCCGTATACAAAGTACGAGGATATAGAGGATTACAAGAAGAATGCTTATGGAACTTCCGGTCACCAGGACGTTAAGCCTGGCCACGGCGGCGGCACAACCGACGCACCGACCCCCTCCGGTGATGCTGCTCCCTCCGCCATAGATTCCGCTAACCAAAAAGCTAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

75

Amino Acids

7.94

Weight (kDa)

5.21

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 6 - 69 5.9e-27 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 62
AciI CCGC 4 cut(s) 144, 147, 192, 204
AcoI YGGCCR 1 cut(s) 136
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 140
AjnI CCWGG 2 cut(s) 120, 133
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 110, 188
BalI TGGCCA 1 cut(s) 138
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 122, 135
BfaI CTAG 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 144
BisI GCNGC 3 cut(s) 145, 148, 183
BlsI GCNGC 3 cut(s) 146, 149, 184
Bme1390I CCNGG 2 cut(s) 122, 135
BmrFI CCNGG 2 cut(s) 122, 135
BmsI GCATC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 2 cut(s) 113, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 122, 135
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 114, 174
BslI CCNNNNNNNGG 1 cut(s) 140
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 138
BspACI CCGC 4 cut(s) 144, 147, 192, 204
BspANI GGCC 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 139
BssNAI GTATAC 1 cut(s) 63
Bst1107I GTATAC 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 122, 135
Bst6I CTCTTC 2 cut(s) 14, 21
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 139
BstEII GGTNACC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 144, 191
BstNI CCWGG 2 cut(s) 122, 135
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 120, 133
BstV1I GCAGC 1 cut(s) 169
BstZ17I GTATAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 139
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 3 cut(s) 133, 138, 218
CviKI_1 RGCY 3 cut(s) 133, 138, 218
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 14, 21
EarI CTCTTC 2 cut(s) 14, 21
EciI GGCGGA 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 120, 133
FaiI YATR 5 cut(s) 14, 63, 80, 105, 197
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 145, 148, 183
Fsp4HI GCNGC 3 cut(s) 145, 148, 183
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 145, 148, 183
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 114, 174
HgaI GACGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 114, 174
HphI GGTGA 2 cut(s) 110, 188
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 191
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 126
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 107, 120, 127, 134, 147, 187
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 3 cut(s) 31, 38, 106
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
MnlI CCTC 4 cut(s) 67, 76, 181, 199
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 2 cut(s) 114, 174
MspR9I CCNGG 2 cut(s) 122, 135
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 122, 135
MwoI GCNNNNNNNGC 2 cut(s) 144, 191
NmuCI GTSAC 1 cut(s) 116
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 146, 149, 184
Psp6I CCWGG 2 cut(s) 120, 133
PspEI GGTNACC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 120, 133
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 145, 148, 183
ScrFI CCNGG 2 cut(s) 122, 135
SetI ASST 2 cut(s) 129, 220
SfaNI GCATC 1 cut(s) 169
SsiI CCGC 4 cut(s) 144, 147, 192, 204
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 120, 133
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 17
TauI GCSGC 2 cut(s) 147, 150
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.