MD02G1181800.v1.1

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014508
Physical Location & Seq
Reverse (-)
16368470 .. 16368748
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1181800.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGCAAGCAAGCAAGAGCAGCAGAACAGAAAGCCAGCTGAGGGTGCAGAGGCAAGAGGGAAGGTAGAGGAAGGGCTGCCGATGAAGGACAGTCCGTATCTGCAGTACGAGGACTTGGAGGATTACAAGCGTCAAGCGTACGGAACACAAGGCCATCAGCAGGTTCAGCCAGGGCGTGGGGCTGGCTCCACCGAGGGCCCCACCGTCTCAGGCGCCACGATCACGTCTCAGGGTGATATCTCCGCCACTGAAGCTATTAACCAACAAGGAGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

93

Amino Acids

9.84

Weight (kDa)

4.86

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 5 - 89 2.5e-32 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 107, 140
AfiI CCNNNNNNNGG 3 cut(s) 41, 160, 176
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 38, 254
AluI AGCT 2 cut(s) 38, 254
Alw26I GTCTC 2 cut(s) 211, 231
AoxI GGCC 2 cut(s) 151, 196
ApaI GGGCCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 19, 76
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 196, 197
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 31, 63
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 211, 231
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 2 cut(s) 20, 77
BlsI GCNGC 2 cut(s) 21, 78
Bme1390I CCNGG 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 196, 197
BmiI GGNNCC 4 cut(s) 187, 198, 199, 214
BmrFI CCNGG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 170, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 160, 176
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 170, 192
BseLI CCNNNNNNNGG 3 cut(s) 41, 160, 176
BseMII CTCAG 3 cut(s) 30, 222, 242
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 2 cut(s) 31, 63
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 2 cut(s) 153, 198
BshNI GGYRCC 1 cut(s) 212
BsiWI CGTACG 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 41, 160, 176
BsmAI GTCTC 2 cut(s) 211, 231
BsmBI CGTCTC 2 cut(s) 211, 231
BsnI GGCC 2 cut(s) 153, 198
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 153, 198
BspCNI CTCAG 3 cut(s) 31, 221, 241
BspLI GGNNCC 4 cut(s) 187, 198, 199, 214
BspMAI CTGCAG 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 170, 192
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 92, 205
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 7, 11, 36, 184
BstDEI CTNAG 3 cut(s) 39, 208, 228
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 2 cut(s) 211, 231
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 19, 44, 166, 251
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 31, 63
BsuRI GGCC 2 cut(s) 153, 198
BtrI CACGTC 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 7, 11, 36, 184
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 196, 197
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 106, 139
CviJI RGCY 9 cut(s) 34, 38, 76, 153, 169, 182, 186, 198, 254
CviKI_1 RGCY 9 cut(s) 34, 38, 76, 153, 169, 182, 186, 198, 254
CviQI GTAC 2 cut(s) 106, 139
DdeI CTNAG 3 cut(s) 39, 208, 228
DinI GGCGCC 1 cut(s) 214
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 196, 197
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 200
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
Esp3I CGTCTC 2 cut(s) 211, 231
Fnu4HI GCNGC 2 cut(s) 20, 77
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 20, 77
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 20, 77
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 153, 198
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HphI GGTGA 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 55, 65, 79
HpyCH4III ACNGT 2 cut(s) 92, 205
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 47, 103
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 44, 166, 251
HpyF3I CTNAG 3 cut(s) 39, 208, 228
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 1 cut(s) 213
KasI GGCGCC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 48, 146, 156, 168, 183, 195, 215
Lsp1109I GCAGC 2 cut(s) 31, 63
MaeII ACGT 1 cut(s) 224
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 200
Mly113I GGCGCC 1 cut(s) 213
MnlI CCTC 7 cut(s) 34, 43, 50, 61, 103, 112, 187
MseI TTAA 2 cut(s) 258, 277
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 19, 44, 166, 251
NarI GGCGCC 1 cut(s) 213
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 4 cut(s) 187, 198, 199, 214
Pfl23II CGTACG 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 2 cut(s) 21, 78
PluTI GGCGCC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 4 cut(s) 187, 198, 199, 214
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 196, 197
PstI CTGCAG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 107, 140
RsaNI GTAC 2 cut(s) 106, 139
SaqAI TTAA 2 cut(s) 258, 277
SatI GCNGC 2 cut(s) 20, 77
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 196, 197
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 200
SetI ASST 5 cut(s) 40, 66, 165, 227, 256
SfcI CTRYAG 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 214
SsiI CCGC 1 cut(s) 243
SspDI GGCGCC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 92, 205
TaiI ACGT 1 cut(s) 227
Tru1I TTAA 2 cut(s) 258, 277
Tru9I TTAA 2 cut(s) 258, 277
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 19, 76
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 84, 156
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.