Rh2AG192700

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014508
Physical Location & Seq
Reverse (-)
19101043 .. 19109644
8602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG192700.1

Sequence Viewer

Length: 663 bp
ATGGCAAGCAAGCCAGGAGGAGGAGGAGGAGAGAGAAAGCCAGCAGCTGATCAGGGAAGCGATGCGAAGTTAGAGCAGGCAATGAAGGACAGTCCGTACGTCCAATCCGATAACTTGGAGGATTACAAGCGCCAGGGGTACGGAACCGAGGGACATCAACAGGTCCAGCCGGGTCGGGGCGCCGGATCCACCGATGCTCCGACTGTTTCCGGGGCTAATGTTTCCTCCAAGGCGGATGTTACCGCCACTGAAACTATCAACCGCCAAGGACTCCATCAAAATGACGAGAAAAGCATACCCATACGGAGTCAAATCTCATATTTGCACCAAAGAACAATTGTTACTAAAGTCTTTAGCAGATACATTCCCAAGTACAGAATCGTCTCTAGTGCGGCTGGACTTTTGATTGTCCTTAAAAATCTAAGGGATGAGTTCAATATGATGTCAAAGTCAAAGGCTAAACTGCTCCATGGGAAGCTCTTGGAAAGGAAATACTATCATGAGGATATCATCTTGGGTTGTAATATGAAATTGAAGCTGCAAGAGCTTATGAATGAGGAGACAAAAAATGTTGTTCACTCAATAAGGAAAAGATATGGACTTGCAATGCATACGTCAGAAGAGAGGAGAGCAATATCTGGTATTATGAAAGAAGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

9.52

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 15 - 89 2.1e-28 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 4 cut(s) 233, 243, 262, 392
AclWI GGATC 2 cut(s) 180, 193
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 98, 140, 374
AfiI CCNNNNNNNGG 2 cut(s) 20, 176
AgsI TTSAA 2 cut(s) 436, 535
AjnI CCWGG 2 cut(s) 13, 132
AluBI AGCT 4 cut(s) 47, 478, 538, 547
AluI AGCT 4 cut(s) 47, 478, 538, 547
Alw26I GTCTC 2 cut(s) 388, 554
AlwI GGATC 2 cut(s) 180, 193
AlwNI CAGNNNCTG 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 44, 538
AspLEI GCGC 2 cut(s) 132, 182
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 171, 211
AvaII GGWCC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 56, 525
BccI CCATC 1 cut(s) 282
BciT130I CCWGG 2 cut(s) 15, 134
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 2 cut(s) 171, 211
BcoDI GTCTC 2 cut(s) 388, 554
BfaI CTAG 1 cut(s) 387
BfoI RGCGCY 2 cut(s) 133, 183
BisI GCNGC 3 cut(s) 45, 393, 539
BlsI GCNGC 3 cut(s) 46, 394, 540
Bme1390I CCNGG 4 cut(s) 15, 134, 171, 211
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 145, 181, 187
BmrFI CCNGG 4 cut(s) 15, 134, 171, 211
BmsI GCATC 2 cut(s) 52, 184
BpuMI CCSGG 2 cut(s) 171, 211
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 6 cut(s) 133, 147, 210, 228, 265, 469
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 176
Bse3DI GCAATG 2 cut(s) 87, 612
BseBI CCWGG 2 cut(s) 15, 134
BseDI CCNNGG 6 cut(s) 133, 147, 210, 228, 265, 469
BseGI GGATG 2 cut(s) 241, 433
BseLI CCNNNNNNNGG 2 cut(s) 20, 176
BseMI GCAATG 2 cut(s) 87, 612
BseRI GAGGAG 6 cut(s) 33, 36, 39, 42, 572, 640
BseXI GCAGC 2 cut(s) 56, 525
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 170, 183, 210
BsiWI CGTACG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 20, 176
BsmAI GTCTC 2 cut(s) 388, 554
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 49, 185
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 4 cut(s) 233, 243, 262, 392
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 145, 181, 187
BspPI GGATC 2 cut(s) 180, 193
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 87, 612
BssECI CCNNGG 6 cut(s) 133, 147, 210, 228, 265, 469
BssMI GATC 2 cut(s) 49, 185
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 3 cut(s) 228, 265, 469
Bst2UI CCWGG 2 cut(s) 15, 134
Bst4CI ACNGT 2 cut(s) 92, 205
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 7, 11, 42, 78
BstDEI CTNAG 1 cut(s) 422
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 241, 433
BstH2I RGCGCY 2 cut(s) 133, 183
BstHHI GCGC 2 cut(s) 132, 182
BstKTI GATC 2 cut(s) 52, 188
BstMAI GTCTC 2 cut(s) 388, 554
BstMBI GATC 2 cut(s) 49, 185
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 2 cut(s) 15, 134
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 4 cut(s) 13, 132, 169, 209
BstV1I GCAGC 2 cut(s) 56, 525
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 241, 433
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 4 cut(s) 7, 11, 42, 78
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 499
CfoI GCGC 2 cut(s) 132, 182
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 97, 139, 373
CviAII CATG 3 cut(s) 470, 500, 658
CviQI GTAC 3 cut(s) 97, 139, 373
DdeI CTNAG 1 cut(s) 422
DinI GGCGCC 1 cut(s) 181
DpnI GATC 2 cut(s) 51, 187
DpnII GATC 2 cut(s) 49, 185
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 3 cut(s) 228, 265, 469
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 13, 132
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 3 cut(s) 228, 265, 469
EcoT22I ATGCAT 1 cut(s) 612
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 3 cut(s) 228, 265, 469
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 3 cut(s) 473, 503, 661
FaqI GGGAC 1 cut(s) 165
FatI CATG 3 cut(s) 469, 499, 657
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 45, 393, 539
FokI GGATG 2 cut(s) 248, 440
Fsp4HI GCNGC 3 cut(s) 45, 393, 539
FspBI CTAG 1 cut(s) 387
GlaI GCGC 2 cut(s) 131, 181
GluI GCNGC 3 cut(s) 45, 393, 539
HaeII RGCGCY 2 cut(s) 133, 183
HapII CCGG 3 cut(s) 170, 183, 210
HhaI GCGC 2 cut(s) 132, 182
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 3 cut(s) 473, 503, 661
Hin6I GCGC 2 cut(s) 130, 180
HinP1I GCGC 2 cut(s) 130, 180
HinfI GANTC 3 cut(s) 270, 307, 378
HpaII CCGG 3 cut(s) 170, 183, 210
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 3 cut(s) 109, 201, 619
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 1 cut(s) 577
HpyAV CCTTC 2 cut(s) 79, 647
HpyCH4III ACNGT 2 cut(s) 92, 205
HpyCH4IV ACGT 2 cut(s) 99, 614
HpyCH4V TGCA 4 cut(s) 325, 541, 605, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 2 cut(s) 99, 614
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 473, 503, 661
HspAI GCGC 2 cut(s) 130, 180
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 185
LmnI GCTCC 2 cut(s) 202, 471
Lsp1109I GCAGC 2 cut(s) 56, 525
LweI GCATC 2 cut(s) 52, 184
MaeI CTAG 1 cut(s) 387
MaeII ACGT 2 cut(s) 99, 614
MaeIII GTNAC 2 cut(s) 238, 340
MalI GATC 2 cut(s) 51, 187
MboI GATC 2 cut(s) 49, 185
MboII GAAGA 1 cut(s) 632
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 185
MluCI AATT 2 cut(s) 336, 530
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 264, 316
MmeI TCCRAC 1 cut(s) 224
Mph1103I ATGCAT 1 cut(s) 612
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 3 cut(s) 170, 183, 210
MspR9I CCNGG 4 cut(s) 15, 134, 171, 211
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 15, 134
MwoI GCNNNNNNNGC 1 cut(s) 544
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 2 cut(s) 171, 211
NcoI CCATGG 1 cut(s) 469
NdeII GATC 2 cut(s) 49, 185
NlaIII CATG 3 cut(s) 473, 503, 661
NlaIV GGNNCC 3 cut(s) 145, 181, 187
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 1 cut(s) 661
PagI TCATGA 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 378
Pfl23II CGTACG 1 cut(s) 96
PkrI GCNGC 3 cut(s) 46, 394, 540
PleI GAGTC 2 cut(s) 264, 315
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 2 cut(s) 264, 315
Psp6I CCWGG 2 cut(s) 13, 132
PspGI CCWGG 2 cut(s) 13, 132
PspLI CGTACG 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 145, 181, 187
PspPI GGNCC 1 cut(s) 163
PsrI GAACNNNNNNTAC 2 cut(s) 325, 357
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 3 cut(s) 98, 140, 374
RsaNI GTAC 3 cut(s) 97, 139, 373
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 45, 393, 539
Sau3AI GATC 2 cut(s) 49, 185
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 264, 316
ScrFI CCNGG 4 cut(s) 15, 134, 171, 211
SetI ASST 7 cut(s) 49, 102, 165, 480, 540, 549, 617
SfaNI GCATC 2 cut(s) 52, 184
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 336, 530
SsiI CCGC 4 cut(s) 233, 243, 262, 392
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 4 cut(s) 13, 132, 169, 209
StyI CCWWGG 3 cut(s) 228, 265, 469
TaaI ACNGT 2 cut(s) 92, 205
TaiI ACGT 2 cut(s) 102, 617
TasI AATT 2 cut(s) 336, 530
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 44, 538
TspDTI ATGAA 4 cut(s) 98, 542, 566, 662
TspGWI ACGGA 3 cut(s) 84, 156, 319
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 1 cut(s) 661
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.