FvH4_1g17140

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014508
Physical Location & Seq
Reverse (-)
9917687 .. 9918642
956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17140.t1

Sequence Viewer

Length: 270 bp
ATGGCGAGCAAGCCAGGAGGAGCAGGAGAGAAGAAGCCTGCGGCGGCTGATAAGGGAAGCGATGCGAAGCTAGACCAGGCAATGAAGGACAGTCCTTACCTGCAGTATGATAACTTGGAGGATTACAAGCGCCAGGGGTACGGAACCGAGGGGCATCAACAGGTGCAGCCGGGTCGGGGCCCCGGAACCACCGAGGGTCCGACGGAGTCCGGGGCCTCCAAGGCGGATGTTTCCGCCACTGAAACTATCAACCGCCAAGGCGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

90

Amino Acids

9.3

Weight (kDa)

5.28

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 11 - 86 7.2e-24 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 108
AciI CCGC 5 cut(s) 41, 44, 224, 234, 253
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 176
AjnI CCWGG 3 cut(s) 13, 75, 132
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AoxI GGCC 2 cut(s) 178, 213
ApaI GGGCCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 4 cut(s) 178, 179, 197, 213
AsuC2I CCSGG 3 cut(s) 171, 183, 211
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 3 cut(s) 15, 77, 134
BcnI CCSGG 3 cut(s) 171, 183, 211
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 3 cut(s) 42, 45, 167
BlsI GCNGC 3 cut(s) 43, 46, 168
Bme1390I CCNGG 6 cut(s) 15, 77, 134, 171, 183, 211
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 4 cut(s) 178, 179, 197, 213
BmiI GGNNCC 7 cut(s) 145, 179, 180, 181, 187, 198, 214
BmrFI CCNGG 6 cut(s) 15, 77, 134, 171, 183, 211
BmsI GCATC 2 cut(s) 52, 163
BpuMI CCSGG 3 cut(s) 171, 183, 211
BsaJI CCNNGG 7 cut(s) 133, 147, 181, 192, 210, 219, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 3 cut(s) 15, 77, 134
BseDI CCNNGG 7 cut(s) 133, 147, 181, 192, 210, 219, 256
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 2 cut(s) 180, 215
BsiSI CCGG 3 cut(s) 170, 183, 210
BslI CCNNNNNNNGG 1 cut(s) 176
BsnI GGCC 2 cut(s) 180, 215
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 182
BspACI CCGC 5 cut(s) 41, 44, 224, 234, 253
BspANI GGCC 2 cut(s) 180, 215
BspLI GGNNCC 7 cut(s) 145, 179, 180, 181, 187, 198, 214
BspMAI CTGCAG 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 87
BssECI CCNNGG 7 cut(s) 133, 147, 181, 192, 210, 219, 256
BssT1I CCWWGG 2 cut(s) 219, 256
Bst2UI CCWGG 3 cut(s) 15, 77, 134
Bst4CI ACNGT 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 7, 11, 39
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 15, 77, 134
BstSCI CCNGG 6 cut(s) 13, 75, 132, 169, 181, 209
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 180, 215
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 7, 11, 39
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 4 cut(s) 178, 179, 197, 213
Csp6I GTAC 1 cut(s) 139
CviJI RGCY 7 cut(s) 13, 37, 47, 70, 169, 180, 215
CviKI_1 RGCY 7 cut(s) 13, 37, 47, 70, 169, 180, 215
CviQI GTAC 1 cut(s) 139
EciI GGCGGA 2 cut(s) 223, 239
Eco130I CCWWGG 2 cut(s) 219, 256
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 197
EcoO109I RGGNCCY 3 cut(s) 178, 179, 213
EcoRII CCWGG 3 cut(s) 13, 75, 132
EcoT14I CCWWGG 2 cut(s) 219, 256
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 219, 256
FaiI YATR 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 42, 45, 167
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 42, 45, 167
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 131
GluI GCNGC 3 cut(s) 42, 45, 167
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 180, 215
HapII CCGG 3 cut(s) 170, 183, 210
HhaI GCGC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 206
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 3 cut(s) 170, 183, 210
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 103, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HspAI GCGC 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 52, 163
MaeI CTAG 1 cut(s) 71
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 5 cut(s) 11, 112, 142, 187, 226
MseI TTAA 1 cut(s) 264
MspI CCGG 3 cut(s) 170, 183, 210
MspR9I CCNGG 6 cut(s) 15, 77, 134, 171, 183, 211
MvaI CCWGG 3 cut(s) 15, 77, 134
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 3 cut(s) 171, 183, 211
NlaIV GGNNCC 7 cut(s) 145, 179, 180, 181, 187, 198, 214
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 43, 46, 168
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 13, 75, 132
PspGI CCWGG 3 cut(s) 13, 75, 132
PspN4I GGNNCC 7 cut(s) 145, 179, 180, 181, 187, 198, 214
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 4 cut(s) 178, 179, 197, 213
PstI CTGCAG 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 42, 45, 167
Sau96I GGNCC 4 cut(s) 178, 179, 197, 213
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 6 cut(s) 15, 77, 134, 171, 183, 211
SduI GDGCHC 1 cut(s) 182
SetI ASST 3 cut(s) 72, 102, 165
SfaNI GCATC 2 cut(s) 52, 163
SfcI CTRYAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 197
SsiI CCGC 5 cut(s) 41, 44, 224, 234, 253
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 6 cut(s) 13, 75, 132, 169, 181, 209
StyI CCWWGG 2 cut(s) 219, 256
TaaI ACNGT 1 cut(s) 92
TauI GCSGC 2 cut(s) 44, 47
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 244
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 156, 218
TspRI CASTG 1 cut(s) 244
Tth111I GACNNNGTC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 197
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.