Prupe.6G224700_v2.0.a1

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014508
Physical Location & Seq
Forward (+)
22931412 .. 22932684
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G224700.1

Sequence Viewer

Length: 285 bp
ATGGAGAGTACGCAAGAGCAGCAGCAGAACAGGAAGCCAGCTGCTGGGGCTAGCGAAGCCAAGGGGAAGATAGAGGAAGGGTTGCCAATGAAGGACAGTCCGTACCTGCAGTACGATGACTTGGAGGATTACAAGCGTCAGGCCTATGGAACGGAAGGCCATCTCCAGGTGGAGCCCGGCCGAGGCGCCGGGTCCACCGAGGGCCCCACTGTTTCTGGCGCCAATGTCTCCTTTCAGGGTGATCTCTCCGCCACCGAAGCTATTAACCGCCAAGGAGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

95

Amino Acids

10.06

Weight (kDa)

4.64

Isoelectric Point (pI)

58.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 114
AccB1I GGYRCC 2 cut(s) 185, 218
AccB7I CCANNNNNTGG 1 cut(s) 44
AciI CCGC 2 cut(s) 249, 268
AcoI YGGCCR 1 cut(s) 178
AcyI GRCGYC 2 cut(s) 186, 219
AfaI GTAC 3 cut(s) 10, 104, 113
AfiI CCNNNNNNNGG 3 cut(s) 44, 166, 182
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 41, 260
AluI AGCT 2 cut(s) 41, 260
Alw26I GTCTC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 4 cut(s) 141, 157, 178, 202
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 19, 22, 41
AspLEI GCGC 2 cut(s) 188, 221
AspS9I GGNCC 3 cut(s) 192, 202, 203
AsuC2I CCSGG 2 cut(s) 177, 190
AsuHPI GGTGA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 2 cut(s) 185, 218
BanII GRGCYC 2 cut(s) 177, 206
BbvI GCAGC 3 cut(s) 28, 31, 34
BccI CCATC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 2 cut(s) 177, 190
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 2 cut(s) 189, 222
BfuAI ACCTGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 20, 23, 42
BlsI GCNGC 3 cut(s) 21, 24, 43
Bme1390I CCNGG 3 cut(s) 167, 177, 190
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 192, 202, 203
BmiI GGNNCC 6 cut(s) 174, 187, 193, 204, 205, 220
BmrFI CCNGG 3 cut(s) 167, 177, 190
BmtI GCTAGC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 177, 190
BsaHI GRCGYC 2 cut(s) 186, 219
BsaJI CCNNGG 4 cut(s) 60, 181, 198, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 166, 182
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 60, 181, 198, 271
BseLI CCNNNNNNNGG 3 cut(s) 44, 166, 182
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 28, 31, 34
BseYI CCCAGC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 143, 159, 180, 204
BshNI GGYRCC 2 cut(s) 185, 218
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 177, 189
BslI CCNNNNNNNGG 3 cut(s) 44, 166, 182
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 4 cut(s) 143, 159, 180, 204
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 177, 206
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 249, 268
BspANI GGCC 4 cut(s) 143, 159, 180, 204
BspLI GGNNCC 6 cut(s) 174, 187, 193, 204, 205, 220
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 185, 218
BssECI CCNNGG 4 cut(s) 60, 181, 198, 271
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 2 cut(s) 186, 219
BssT1I CCWWGG 2 cut(s) 60, 271
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 98, 211
BstACI GRCGYC 2 cut(s) 186, 219
BstC8I GCNNGC 2 cut(s) 39, 52
BstH2I RGCGCY 2 cut(s) 189, 222
BstHHI GCGC 2 cut(s) 188, 221
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 4 cut(s) 19, 47, 56, 257
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 165, 175, 188
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 28, 31, 34
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 4 cut(s) 143, 159, 180, 204
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 39, 52
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 2 cut(s) 188, 221
Cfr13I GGNCC 3 cut(s) 192, 202, 203
CseI GACGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 9, 103, 112
CviQI GTAC 3 cut(s) 9, 103, 112
DinI GGCGCC 2 cut(s) 187, 220
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 178
EagI CGGCCG 1 cut(s) 178
EciI GGCGGA 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 60, 271
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 177, 206
Eco47I GGWCC 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 178
EcoO109I RGGNCCY 2 cut(s) 202, 203
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 60, 271
EcoT38I GRGCYC 2 cut(s) 177, 206
EgeI GGCGCC 2 cut(s) 187, 220
EheI GGCGCC 2 cut(s) 187, 220
ErhI CCWWGG 2 cut(s) 60, 271
FaiI YATR 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 20, 23, 42
FriOI GRGCYC 2 cut(s) 177, 206
Fsp4HI GCNGC 3 cut(s) 20, 23, 42
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 187, 220
GluI GCNGC 3 cut(s) 20, 23, 42
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 189, 222
HaeIII GGCC 4 cut(s) 143, 159, 180, 204
HapII CCGG 2 cut(s) 177, 189
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 188, 221
Hin1I GRCGYC 2 cut(s) 186, 219
Hin6I GCGC 2 cut(s) 186, 219
HinP1I GCGC 2 cut(s) 186, 219
HpaII CCGG 2 cut(s) 177, 189
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 71, 85, 149
HpyCH4III ACNGT 2 cut(s) 98, 211
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 47, 56, 257
Hsp92I GRCGYC 2 cut(s) 186, 219
HspAI GCGC 2 cut(s) 186, 219
KasI GGCGCC 2 cut(s) 185, 218
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 3 cut(s) 28, 31, 34
MaeI CTAG 1 cut(s) 51
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 177, 206
Mly113I GGCGCC 2 cut(s) 186, 219
MnlI CCTC 4 cut(s) 67, 118, 176, 193
MseI TTAA 2 cut(s) 264, 283
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 177, 189
MspR9I CCNGG 3 cut(s) 167, 177, 190
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 19, 47, 56, 257
NarI GGCGCC 2 cut(s) 186, 219
NciI CCSGG 2 cut(s) 177, 190
NdeII GATC 1 cut(s) 241
NheI GCTAGC 1 cut(s) 50
NlaIV GGNNCC 6 cut(s) 174, 187, 193, 204, 205, 220
NmeAIII GCCGAG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 3 cut(s) 21, 24, 43
PluTI GGCGCC 2 cut(s) 189, 222
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 6 cut(s) 174, 187, 193, 204, 205, 220
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 192, 202, 203
PstI CTGCAG 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 3 cut(s) 10, 104, 113
RsaNI GTAC 3 cut(s) 9, 103, 112
SaqAI TTAA 2 cut(s) 264, 283
SatI GCNGC 3 cut(s) 20, 23, 42
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 3 cut(s) 192, 202, 203
ScrFI CCNGG 3 cut(s) 167, 177, 190
SduI GDGCHC 2 cut(s) 177, 206
SetI ASST 4 cut(s) 43, 108, 171, 262
SfcI CTRYAG 1 cut(s) 107
SfoI GGCGCC 2 cut(s) 187, 220
SinI GGWCC 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 2 cut(s) 249, 268
SspDI GGCGCC 2 cut(s) 185, 218
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 165, 175, 188
StyI CCWWGG 2 cut(s) 60, 271
TaaI ACNGT 2 cut(s) 98, 211
Tru1I TTAA 2 cut(s) 264, 283
Tru9I TTAA 2 cut(s) 264, 283
TscAI CASTG 1 cut(s) 214
TseI GCWGC 3 cut(s) 19, 22, 41
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 90, 167
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.