MD15G1292700.v1.1

Late embryogenesis abundant protein 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014508
Physical Location & Seq
Reverse (-)
27107361 .. 27108070
710 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1292700.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGCGAGCAACCAAAAGCAGCAGAGCAGAAAGCCAGCTGAGGGCGAAGCAAAAGGGAAGGTGGAGGAAGAGCTGCCGATGAAGGACAGTCCGTACCTGCAGTACGATAACCTGGAGGATTACAAGCGCCAGGCATACGGAACGGAAGGCCACCAACAGGTGGAGCCAGGGCGAGGTGCTGGCTCCACAGAAGCCCCCACCGTTTCCGGCACCACTGTCTCCTCTCAGGGGATAATGGTTGATGTTGATTATTCGATGCCCGTAGGCGCAGGGACGACTCCGGCATTTTTCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_6

Protein Analysis

100

Amino Acids

10.69

Weight (kDa)

4.89

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_6 PF10714 4 - 77 1.1e-30 Late embryogenesis abundant protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23110 AT2G23110 AT2G33690
fragaria_vesca FvH4_1g17140
malus_domestica MD02G1181800.v1.1 MD15G1292700.v1.1
prunus_persica Prupe.6G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107321
rosa_multiflora Rmu_sc0006416.1_g000001
rosa_roxburghii Rroxscaffold_2G00136440
rosa_rugosa Rorug02G0141900.1 Rorug02G0142000
rosa_samantha Rh2AG192700 Rh2BG204800 Rh2CG197900 Rh2DG199900
rosa_wichuraiana Rw2G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 160
AfaI GTAC 2 cut(s) 95, 104
AfiI CCNNNNNNNGG 5 cut(s) 41, 157, 160, 173, 228
AjnI CCWGG 3 cut(s) 111, 129, 166
AluBI AGCT 2 cut(s) 38, 73
AluI AGCT 2 cut(s) 38, 73
Alw26I GTCTC 1 cut(s) 223
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 19, 73
AspLEI GCGC 2 cut(s) 129, 269
BanI GGYRCC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 31, 60
BciT130I CCWGG 3 cut(s) 113, 131, 168
BcoDI GTCTC 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 20, 74
BlsI GCNGC 2 cut(s) 21, 75
Bme1390I CCNGG 3 cut(s) 113, 131, 168
BmiI GGNNCC 3 cut(s) 165, 184, 211
BmrFI CCNGG 3 cut(s) 113, 131, 168
BmsI GCATC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 157, 160, 173, 228
BseBI CCWGG 3 cut(s) 113, 131, 168
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 5 cut(s) 41, 157, 160, 173, 228
BseMII CTCAG 2 cut(s) 30, 239
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 31, 60
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 207, 281
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 5 cut(s) 41, 157, 160, 173, 228
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 150
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 31, 238
BspLI GGNNCC 3 cut(s) 165, 184, 211
BspMAI CTGCAG 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 113, 131, 168
Bst4CI ACNGT 3 cut(s) 89, 202, 217
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 7, 36, 181
BstDEI CTNAG 2 cut(s) 39, 225
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 269
BstMAI GTCTC 1 cut(s) 223
BstNI CCWGG 3 cut(s) 113, 131, 168
BstSCI CCNGG 3 cut(s) 111, 129, 166
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 31, 60
BsuRI GGCC 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 7, 36, 181
CfoI GCGC 2 cut(s) 129, 269
Csp6I GTAC 2 cut(s) 94, 103
CviJI RGCY 7 cut(s) 34, 38, 73, 150, 166, 183, 194
CviKI_1 RGCY 7 cut(s) 34, 38, 73, 150, 166, 183, 194
CviQI GTAC 2 cut(s) 94, 103
DdeI CTNAG 2 cut(s) 39, 225
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 111, 129, 166
FaiI YATR 1 cut(s) 136
FaqI GGGAC 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 20, 74
Fsp4HI GCNGC 2 cut(s) 20, 74
GlaI GCGC 2 cut(s) 128, 268
GluI GCNGC 2 cut(s) 20, 74
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 207, 281
HhaI GCGC 2 cut(s) 129, 269
Hin6I GCGC 2 cut(s) 127, 267
HinP1I GCGC 2 cut(s) 127, 267
HinfI GANTC 1 cut(s) 277
HpaII CCGG 2 cut(s) 207, 281
HpyAV CCTTC 3 cut(s) 52, 76, 140
HpyCH4III ACNGT 3 cut(s) 89, 202, 217
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 39, 225
HspAI GCGC 2 cut(s) 127, 267
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 163, 188
Lsp1109I GCAGC 2 cut(s) 31, 60
LweI GCATC 1 cut(s) 246
MboII GAAGA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 5 cut(s) 34, 58, 109, 167, 232
MseI TTAA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 207, 281
MspR9I CCNGG 3 cut(s) 113, 131, 168
MvaI CCWGG 3 cut(s) 113, 131, 168
NlaIV GGNNCC 3 cut(s) 165, 184, 211
PciSI GCTCTTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 2 cut(s) 21, 75
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 111, 129, 166
PspGI CCWGG 3 cut(s) 111, 129, 166
PspN4I GGNNCC 3 cut(s) 165, 184, 211
PstI CTGCAG 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 95, 104
RsaNI GTAC 2 cut(s) 94, 103
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 20, 74
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 113, 131, 168
SetI ASST 7 cut(s) 40, 63, 75, 99, 114, 162, 178
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 98
StyD4I CCNGG 3 cut(s) 111, 129, 166
TaaI ACNGT 3 cut(s) 89, 202, 217
TaqI TCGA 1 cut(s) 254
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 220
TseI GCWGC 2 cut(s) 19, 73
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 3 cut(s) 81, 153, 158
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.