AT2G24090

Belongs to the bacterial ribosomal protein bL35 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013010
Physical Location & Seq
Forward (+)
10241875 .. 10243674
1800 bp
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UTR
Exon/CDS
Intron
AT2G24090.1

Sequence Viewer

Length: 438 bp
ATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCATCCTTTACGCTCTTCTTCTCCAAAGGTCTCACTTCGCAGTTCCGTTCATTTCGCGACGAGTCTTTCCTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTGCCTCTGAAGATTTCTACAGTTGCTTCCCCCAATTCTCAAAAGCTTCATTCTTTTACCGTTTTCGCTCATAAGGGCTACAAGATGAAGACCCACAAGGCCTCAGCGAAGCGGTTCAGAGTGACGGGTAGAGGGAAGATTGTGAGGAGGAGATCTGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATTACGTCTATCGAAAATGACGGAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCTGCCCTACTTGAAAGTCAATCGAAAGGCGACTTAA

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

11.84

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 75 - 131 1.3e-20 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24090
fragaria_vesca FvH4_4g09690 FvH4_4g09690
malus_domestica MD04G1052200.v1.1
prunus_persica Prupe.1G102100_v2.0.a1
pyrus_communis pycom04g04590
rosa_chinensis RchiOBHm_Chr4g0405501
rosa_laevigata RLG00000008838
rosa_multiflora Rmu_sc0003981.1_g000024 Rmu_sc0005023.1_g000021
rosa_roxburghii Rroxscaffold_5G00350000
rosa_rugosa Rorug04G0060600
rosa_samantha Rh4AG132300 Rh4BG127200 Rh4CG139800 Rh4DG126600
rosa_wichuraiana Rw0G018140 Rw4G010710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 98, 138
AciI CCGC 1 cut(s) 256
AclI AACGTT 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 415
AluBI AGCT 4 cut(s) 36, 190, 320, 401
AluI AGCT 4 cut(s) 36, 190, 320, 401
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 296
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 304, 307
BseXI GCAGC 1 cut(s) 319
Bsh1236I CGCG 2 cut(s) 98, 138
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 2 cut(s) 296, 393
Bsp68I TCGCGA 1 cut(s) 98
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 260
BspFNI CGCG 2 cut(s) 98, 138
BspQI GCTCTTC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 76
BssMI GATC 2 cut(s) 296, 393
Bst4CI ACNGT 2 cut(s) 166, 205
Bst6I CTCTTC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 247, 321
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 2 cut(s) 98, 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 299, 396
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 296, 393
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 2 cut(s) 98, 138
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 43
BtuMI TCGCGA 1 cut(s) 98
CfoI GCGC 1 cut(s) 140
CviJI RGCY 9 cut(s) 5, 20, 36, 133, 190, 222, 245, 320, 401
CviKI_1 RGCY 9 cut(s) 5, 20, 36, 133, 190, 222, 245, 320, 401
DdeI CTNAG 2 cut(s) 247, 321
DpnI GATC 2 cut(s) 298, 395
DpnII GATC 2 cut(s) 296, 393
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 401
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 403
FaiI YATR 2 cut(s) 216, 384
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 308
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 373
HhaI GCGC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 103
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 28, 370
Hpy188I TCNGA 3 cut(s) 153, 263, 398
Hpy188III TCNNGA 2 cut(s) 97, 300
Hpy8I GTNNAC 2 cut(s) 28, 370
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 166, 205
HpyCH4IV ACGT 3 cut(s) 30, 346, 390
HpyF3I CTNAG 2 cut(s) 247, 321
HpySE526I ACGT 3 cut(s) 30, 346, 390
HspAI GCGC 1 cut(s) 138
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 296, 393
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 375, 398
LpnPI CCDG 3 cut(s) 114, 285, 386
Lsp1109I GCAGC 1 cut(s) 319
MaeII ACGT 3 cut(s) 30, 346, 390
MaeIII GTNAC 2 cut(s) 116, 265
MalI GATC 2 cut(s) 298, 395
MboI GATC 2 cut(s) 296, 393
MboII GAAGA 6 cut(s) 48, 51, 166, 244, 292, 337
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 2 cut(s) 178, 341
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 7 cut(s) 121, 159, 256, 269, 282, 285, 330
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 27, 436
MspI CCGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 98, 138
NdeII GATC 2 cut(s) 296, 393
NmuCI GTSAC 2 cut(s) 116, 265
NruI TCGCGA 1 cut(s) 98
PceI AGGCCT 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 30
PsuI RGATCY 1 cut(s) 296
RruI TCGCGA 1 cut(s) 98
SacI GAGCTC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 27, 436
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 296, 393
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 403
SetI ASST 8 cut(s) 33, 38, 72, 192, 322, 349, 393, 403
SfcI CTRYAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 178, 341
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 1 cut(s) 256
SstI GAGCTC 1 cut(s) 403
StuI AGGCCT 1 cut(s) 245
TaaI ACNGT 2 cut(s) 166, 205
TaiI ACGT 3 cut(s) 33, 349, 393
TaqI TCGA 2 cut(s) 353, 424
TasI AATT 2 cut(s) 178, 341
Tru1I TTAA 2 cut(s) 27, 436
Tru9I TTAA 2 cut(s) 27, 436
TseFI GTSAC 2 cut(s) 116, 265
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 2 cut(s) 116, 265
TspDTI ATGAA 3 cut(s) 80, 182, 245
TspGWI ACGGA 3 cut(s) 13, 76, 377
XmnI GAANNNNTTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.