Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013010

Physical Location & Seq

Genomic Coordinates Reverse (-)

4205911 .. 4207488

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGGAGTACAAACTTCATCCATAAGCGTTTGCTGTCAGTGGAAGAAGAGAAAGTAAGAATGGCTTGTGTAGGTGTAACCATGACCATGGCGGCATCGTTTGGTCTGAGATACTACCCATCGTGCTCTTACCCAACTCAACTCAATCACGGCTCAGTTCAACTCGGTAACTTCAAGAGGCCCAAACCCTTGAGACTCAGTTCCTCGCAATCGCATAGCATTTCTGGGTTGGACTCGCTTCTTCCCCACAAGCTCTCCGCTATCAATTTCACCCCTCCTCGCCGCCTTAGCTCTCTTACCATCGTCTCCGCCAAAGGCTACAAAATGAAGACCCACAAGGCTTCGGCGAAGCGCTTCAGGGTGACGGGTAGAGGAAAAATAGTTCGGAGGAGAGCTGGAAAGCAACATTTGCTTGTAAAGAAGAATGCCAAGAGGAGAACTCGACTCTCCAAAATGCATGCAGTTAGTCGAAGTGACTATGACAACGTGATTGGAGCCTTGCCATACCTAAAAGTAAATAGGAAGGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0009507 GO:0009536 GO:0015934 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

178

Amino Acids

19.98

Weight (kDa)

11.41

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24090
fragaria_vesca	FvH4_4g09690 FvH4_4g09690
malus_domestica	MD04G1052200.v1.1
prunus_persica	Prupe.1G102100_v2.0.a1
pyrus_communis	pycom04g04590
rosa_chinensis	RchiOBHm_Chr4g0405501
rosa_laevigata	RLG00000008838
rosa_multiflora	Rmu_sc0003981.1_g000024 Rmu_sc0005023.1_g000021
rosa_roxburghii	Rroxscaffold_5G00350000
rosa_rugosa	Rorug04G0060600
rosa_samantha	Rh4AG132300 Rh4BG127200 Rh4CG139800 Rh4DG126600
rosa_wichuraiana	Rw0G018140 Rw4G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	92, 258, 283, 309
AcuI	CTGAAG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	10
AfeI	AGCGCT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	161, 175
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	3 cut(s)	253, 291, 395
AluI	AGCT	3 cut(s)	253, 291, 395
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	187, 310
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	262, 373
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	128
BccI	CCATC	2 cut(s)	127, 308
BceAI	ACGGC	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	187, 310
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	2 cut(s)	93, 283
BlsI	GCNGC	2 cut(s)	94, 284
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	496
BmsI	GCATC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	98, 168, 211
BseRI	GAGGAG	4 cut(s)	19, 267, 403, 448
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	187, 310
BsmBI	CGTCTC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	92, 258, 283, 309
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	3 cut(s)	99, 167, 210
BspLI	GGNNCC	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	4 cut(s)	107, 154, 197, 287
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	187, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 409
BstNSI	RCATGY	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	3 cut(s)	82, 88, 458
CviJI	RGCY	9 cut(s)	65, 153, 181, 253, 291, 318, 341, 395, 497
CviKI_1	RGCY	9 cut(s)	65, 153, 181, 253, 291, 318, 341, 395, 497
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	4 cut(s)	107, 154, 197, 287
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	3 cut(s)	85, 91, 461
FaiI	YATR	7 cut(s)	24, 83, 89, 216, 459, 480, 505
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	3 cut(s)	81, 87, 457
Fnu4HI	GCNGC	2 cut(s)	93, 283
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	2 cut(s)	93, 283
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	93, 283
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	85, 91, 461
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	3 cut(s)	195, 233, 444
HphI	GGTGA	2 cut(s)	262, 373
Hpy188I	TCNGA	2 cut(s)	108, 387
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	457, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 409
HpyF3I	CTNAG	4 cut(s)	107, 154, 197, 287
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	85, 91, 461
HspAI	GCGC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	3 cut(s)	210, 343, 381
LweI	GCATC	1 cut(s)	104
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	76, 167, 361, 473
MboII	GAAGA	5 cut(s)	56, 59, 233, 340, 433
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	3 cut(s)	189, 227, 438
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	171, 214, 285, 288, 365, 381, 426
Mph1103I	ATGCAT	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	288, 409
NcoI	CCATGG	1 cut(s)	87
NlaIII	CATG	3 cut(s)	85, 91, 461
NlaIV	GGNNCC	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	361, 473
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	94, 284
PleI	GAGTC	3 cut(s)	189, 227, 438
PpsI	GAGTC	3 cut(s)	189, 227, 438
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	180
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	2 cut(s)	93, 283
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	3 cut(s)	189, 227, 438
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	6 cut(s)	76, 255, 293, 397, 489, 510
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	4 cut(s)	92, 258, 283, 309
StyI	CCWWGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	2 cut(s)	442, 469
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	95, 285
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	361, 473
Tsp45I	GTSAC	2 cut(s)	361, 473
TspDTI	ATGAA	2 cut(s)	7, 341
TspRI	CASTG	1 cut(s)	45
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.