Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013010

Physical Location & Seq

Genomic Coordinates Forward (+)

8146558 .. 8148953

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G102100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCTGTGCAGCCATGGCCATGGCGGTTCCGTTTGGTCTGAGATATTCCCCATCATGCTCTTTCATGGCTCAGCTCTCTCGCGGCTCAGTTCAACTCGCTCAATTCAATAGGCCCAACTCGTTGGGACTCAGTTCCTCGCATAGCATTTCTGGGTTGGCCTCGCTTCTTCCTCACAGGCTCTGCACTATTGCTTCAAGCCCTCTTAGGCCTCGCTCTCTCACCATCGTCTCTGCTAAAGGCTACAAAATGAAGACCCACAAGGCTTCGGCGAAGCGGTTCAGGGTGACAGGTAGAGGGAAAATAGTTCGGAGGAGAGCTGGAAAGCAACATTTACTTGTAAAGAAGAATGCCAAGAGGAGAACTCGACTATCCAAAATGCATGCGGTGAGTCGAAGTGACTATAACAATGTGATTGGAGCCTTGCCATATCTGAAAGTAAATAGAAAGGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0009507 GO:0009536 GO:0015934 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

153

Amino Acids

16.72

Weight (kDa)

11.87

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24090
fragaria_vesca	FvH4_4g09690 FvH4_4g09690
malus_domestica	MD04G1052200.v1.1
prunus_persica	Prupe.1G102100_v2.0.a1
pyrus_communis	pycom04g04590
rosa_chinensis	RchiOBHm_Chr4g0405501
rosa_laevigata	RLG00000008838
rosa_multiflora	Rmu_sc0003981.1_g000024 Rmu_sc0005023.1_g000021
rosa_roxburghii	Rroxscaffold_5G00350000
rosa_rugosa	Rorug04G0060600
rosa_samantha	Rh4AG132300 Rh4BG127200 Rh4CG139800 Rh4DG126600
rosa_wichuraiana	Rw0G018140 Rw4G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	26, 84, 277, 386
AcoI	YGGCCR	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	95, 109, 198
AluBI	AGCT	2 cut(s)	76, 320
AluI	AGCT	2 cut(s)	76, 320
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	5 cut(s)	3, 18, 113, 159, 209
ApeKI	GCWGC	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	214, 298, 400
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	61, 233
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	12, 85
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	2 cut(s)	13, 86
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	30, 421
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu1102I	GCTNAGC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	15, 21
BseDI	CCNNGG	2 cut(s)	15, 21
BseMII	CTCAG	5 cut(s)	32, 86, 102, 145, 444
BseRI	GAGGAG	2 cut(s)	328, 373
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	30, 169
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	5 cut(s)	5, 20, 115, 161, 211
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	5 cut(s)	5, 20, 115, 161, 211
Bsp1720I	GCTNAGC	1 cut(s)	72
Bsp19I	CCATGG	2 cut(s)	15, 21
BspACI	CCGC	4 cut(s)	26, 84, 277, 386
BspANI	GGCC	5 cut(s)	5, 20, 115, 161, 211
BspCNI	CTCAG	5 cut(s)	33, 85, 101, 144, 445
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	30, 421
BssECI	CCNNGG	2 cut(s)	15, 21
BssT1I	CCWWGG	2 cut(s)	15, 21
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	6 cut(s)	41, 72, 88, 131, 206, 453
BstDSI	CCRYGG	2 cut(s)	15, 21
BstFNI	CGCG	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 17
BstNSI	RCATGY	1 cut(s)	386
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	260
BstXI	CCANNNNNNTGG	2 cut(s)	22, 124
BsuRI	GGCC	5 cut(s)	5, 20, 115, 161, 211
BtgI	CCRYGG	2 cut(s)	15, 21
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	5 cut(s)	16, 22, 57, 67, 383
DdeI	CTNAG	6 cut(s)	41, 72, 88, 131, 206, 453
EaeI	YGGCCR	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	15, 21
Eco147I	AGGCCT	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	15, 21
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	15, 21
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	5 cut(s)	19, 25, 60, 70, 386
FaiI	YATR	8 cut(s)	17, 23, 58, 68, 144, 384, 405, 430
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	15, 21, 56, 66, 382
Fnu4HI	GCNGC	2 cut(s)	12, 85
Fsp4HI	GCNGC	2 cut(s)	12, 85
GluI	GCNGC	2 cut(s)	12, 85
HaeIII	GGCC	5 cut(s)	5, 20, 115, 161, 211
Hin1II	CATG	5 cut(s)	19, 25, 60, 70, 386
HinfI	GANTC	2 cut(s)	129, 391
HphI	GGTGA	3 cut(s)	214, 298, 400
Hpy188I	TCNGA	3 cut(s)	42, 312, 435
HpyCH4V	TGCA	3 cut(s)	11, 186, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 17
HpyF3I	CTNAG	6 cut(s)	41, 72, 88, 131, 206, 453
Hsp92II	CATG	5 cut(s)	19, 25, 60, 70, 386
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	6 cut(s)	19, 138, 163, 268, 276, 306
Lsp1109I	GCAGC	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	286, 398
MboII	GAAGA	3 cut(s)	161, 265, 358
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	123, 400
MnlI	CCTC	8 cut(s)	148, 172, 183, 213, 222, 290, 306, 351
Mox20I	TGGCCA	1 cut(s)	20
Mph1103I	ATGCAT	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	11, 17
NcoI	CCATGG	2 cut(s)	15, 21
NlaIII	CATG	5 cut(s)	19, 25, 60, 70, 386
NlaIV	GGNNCC	2 cut(s)	30, 421
NmuCI	GTSAC	2 cut(s)	286, 398
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	13, 86
PleI	GAGTC	2 cut(s)	123, 399
PpsI	GAGTC	2 cut(s)	123, 399
PspN4I	GGNNCC	2 cut(s)	30, 421
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	12, 85
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	123, 400
SetI	ASST	3 cut(s)	78, 295, 322
SmiMI	CAYNNNNRTG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	26, 84, 277, 386
StuI	AGGCCT	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	15, 21
TaqI	TCGA	2 cut(s)	367, 394
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	286, 398
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	286, 398
TspDTI	ATGAA	2 cut(s)	55, 266
TspGWI	ACGGA	1 cut(s)	21
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.