FvH4_4g09690

Belongs to the bacterial ribosomal protein bL35 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013010
Physical Location & Seq
Forward (+)
11573562 .. 11576084
2523 bp
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UTR
Exon/CDS
Intron
FvH4_4g09690.t2

Sequence Viewer

Length: 453 bp
ATGGCTTCCGCGACGGTGACCATGACGGTGTCGTTTGGTCTGAGATACTCCCCATTGTGCTCTTGTAGGGTTGGTCAAGCCTCAGTTCAACTCGCTCAACTCAACCGGCCCAACTCATTGAGACTCAGTTCCTCACACACCATTTCTGGGTTCCGCTCACTTCTTCCCCTCCGGCTCTGCACCATCACTTCCACACCTCTTAGGCTTCGCTCTTTCACTATTGTAGCTCATAAAGGCTACAAAATGAAGACCCACAAGGCTTCATCAAAGCGGTTCAGGGTGACAGGTAGAGGGAAGATAGTTCGGAGGAGAGCCAGAAAGCAACATTTACTTGTGAAGAAGAATGCCAAGAGGAGAAACCGGCTCTCCAAAATGCATGCAGTTAGTCGAAGTGACTATGACAATGTGATTGGAGCATTGCCATATCTGAAAGTAAATAGGAAGGCAGAATAA

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

11.93

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 80 - 136 7.3e-19 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24090
fragaria_vesca FvH4_4g09690 FvH4_4g09690
malus_domestica MD04G1052200.v1.1
prunus_persica Prupe.1G102100_v2.0.a1
pyrus_communis pycom04g04590
rosa_chinensis RchiOBHm_Chr4g0405501
rosa_laevigata RLG00000008838
rosa_multiflora Rmu_sc0003981.1_g000024 Rmu_sc0005023.1_g000021
rosa_roxburghii Rroxscaffold_5G00350000
rosa_rugosa Rorug04G0060600
rosa_samantha Rh4AG132300 Rh4BG127200 Rh4CG139800 Rh4DG126600
rosa_wichuraiana Rw0G018140 Rw4G010710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 1 cut(s) 11
AciI CCGC 3 cut(s) 9, 154, 271
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 28, 292
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse118I RCCGGY 2 cut(s) 105, 360
Bse3DI GCAATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 3 cut(s) 32, 96, 139
BseRI GAGGAG 2 cut(s) 322, 367
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 3 cut(s) 106, 172, 361
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 62
BspACI CCGC 3 cut(s) 9, 154, 271
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 3 cut(s) 33, 95, 138
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 2 cut(s) 105, 360
BssAI RCCGGY 2 cut(s) 105, 360
Bst4CI ACNGT 2 cut(s) 16, 28
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 4 cut(s) 41, 82, 125, 200
BstEII GGTNACC 1 cut(s) 16
BstFNI CGCG 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 16
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 378
Cfr10I RCCGGY 2 cut(s) 105, 360
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 2 cut(s) 22, 377
DdeI CTNAG 4 cut(s) 41, 82, 125, 200
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 2 cut(s) 25, 380
FaiI YATR 5 cut(s) 23, 231, 378, 399, 424
FatI CATG 2 cut(s) 21, 376
HaeIII GGCC 1 cut(s) 109
HapII CCGG 3 cut(s) 106, 172, 361
Hin1II CATG 2 cut(s) 25, 380
HinfI GANTC 1 cut(s) 123
HpaII CCGG 3 cut(s) 106, 172, 361
HphI GGTGA 2 cut(s) 28, 292
Hpy188I TCNGA 3 cut(s) 42, 306, 429
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 2 cut(s) 16, 28
HpyCH4V TGCA 3 cut(s) 180, 376, 380
HpyF3I CTNAG 4 cut(s) 41, 82, 125, 200
Hsp92II CATG 2 cut(s) 25, 380
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 7 cut(s) 119, 132, 185, 262, 270, 328, 374
MaeIII GTNAC 3 cut(s) 16, 280, 392
MbiI CCGCTC 1 cut(s) 156
MboII GAAGA 5 cut(s) 155, 259, 307, 349, 352
MhlI GDGCHC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 7 cut(s) 91, 142, 179, 207, 284, 300, 345
Mph1103I ATGCAT 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 3 cut(s) 106, 172, 361
Mva1269I GAATGC 1 cut(s) 349
MvnI CGCG 1 cut(s) 11
NlaIII CATG 2 cut(s) 25, 380
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 3 cut(s) 16, 280, 392
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PctI GAATGC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 28
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 62
SetI ASST 3 cut(s) 199, 229, 289
SmiMI CAYNNNNRTG 1 cut(s) 26
SphI GCATGC 1 cut(s) 380
SsiI CCGC 3 cut(s) 9, 154, 271
TaaI ACNGT 2 cut(s) 16, 28
TaqI TCGA 1 cut(s) 388
TseFI GTSAC 3 cut(s) 16, 280, 392
Tsp45I GTSAC 3 cut(s) 16, 280, 392
TspDTI ATGAA 2 cut(s) 252, 260
Tth111I GACNNNGTC 1 cut(s) 28
XceI RCATGY 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.