Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000450

Physical Location & Seq

Genomic Coordinates Forward (+)

9463655 .. 9476017

Gene Structure 12363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGCTTCGGCTCAGGTGTTGCCCAATTCGACGCGGAAACAAGAACATTTGGAAGCTGGAAAGCGCCGGCTGGAGGAGTTCCGTAAGAAAAAAGCAGCAGAAAGAGCTAAGAAGACGTCATCTTCTAGCCAGGTCAATGTCTCTGAAGTTAGCTCAAATGAGAAACAACCTATAGAAACTGTACGGGTTACAGTCTCAGATGGAGCTGGTACATCTGATGGGCCTGTGGGTGGTTTCACTGAAGCTTCTTCTGTAATATCGAGCAACGGTGACAACGCCATTGATTTTTCCCACCAAAAGGAACATGCTTCTTCAAATAATACACACAGTAGTTCTTCAACAAATGATTCTAATGCATTTTCTGTAGATCAAGAATATAAGAGATTTGGTGTCTCAGGTTTTTCTGGACCCTCAGATGTTGGTTATAGCTATGATATAAAAGGGATGAATAATGATGTTGAAAAAGATACTGGTACCTCAGATGTTTTACCATATGGACCCACTTCTAACCATCCTATTGCTCTACGTCCACAAGCAAGTCAAGAATTTGAAAGCAACACAAGCCAATCCAGCTTTTATGGGATTCAGTCCTCAGAACATAAACTTTCTTCGAGGGATTCCGTAGGTGCAGGTTTGGGTACTTCTCAACAATCTGTTGCAAAAATCTCACCTCAGAACTCTGTCAGCACATTTCCACAAAGTGAGGCCAGTAATTTCAGCACAATGGCTAGTGGCCCTGCTTCATCATCTTCGCTTTATCAAGACTTGATTCAACCTAGTACCAGTGCAAGAGAGTTTGCTCAAGAAGTTGGGAAAAGCATGCGTGGTGGTACTGCAGACTTTGGTGATCCTGTAACTTTCAGATTTGGAGAAGGAAAACTAAGTAGCTCTGCAAGTGGTATGCCTAGCTTGCAGCGTGCACAAGTGCAAACAACTGAATCCAGTGGTTTTGGATATGATGGTAGAAGTTCGTCCAATCATGTACAGCTAGAGTCAGTTACACCTGATACTAGTTCTAGGAGATCTCGTCCATCATTCCTTGATTCTCTTAATGTTCCTAAGGCTTCTTCCGGGAGTCCTTTTCAACAAGCTGAGCCTGAGGAGTCATATTTCTCCAACAGTTCTAAATCAAATGGCATGAGCTTCCTGGGATCACTGCCTTTCCATAAGCCATCTATGGACGATGGACCTGTTGCACCTCATTCATTTGAGCATTCCAATAAGTTTTCATTTTCTCCTAGTGCTGGGGTGGACCAGCAGAGGCCAATAGTTGAAAGTAGCGTGGACAGAAAACACGAGTTCTATTCATCTAAGCAAAATGATGATTTTGCAGCTTTGGAACAGCACATTGAAGATTTGACACAAGAAAAGTTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTGAAAATTCTTCTTTGACAGAGACTTATAACCAACAGAGAAGCGTTGTTGACCAACTAAAATCTGACTTGGAAACGTTACAAGCGGAGATCAAGGCCCAGATGGTGGAACTTGAGGCCGTCAGAAATGAATATGCAAATGCCCATCTAGAATGTAATGCAGCCGATGAACGTTCCAAGTTATTGGCTTCTGAAGTTATTAGTTTGGAGGAGAAGGCACTCAGACTAAGGTCAAGTGAGCTAAAGCTGGAGAGGCAATTGGAGAACTCACAAGCCGAAATCTCTTCATACAAAAAAAGATTGTCTAGCCTAGAAAAAGACCGTTCGGATTTGCAGTCAACTATCAGTGCTCTTCAGGAAGAGAAGAAGCTATTGCAGTCTATGCTAAGGAAAGCTTCCACTAATGAAAGGAAAGCTGATGTTAGCAAGAGTACTACTAACAAGAAAGATGTGTTTACTTCTACAGAAGATCTAGATGAGGAGGTTGGTCCCGACACCGTAGACCAGGAAATGCGTGATGTATCCTGTTTCCCCATGCTCCCTGAACATGGACAGTCAAGTGTTGATGTCTCATCTGTAAATATACCTCCTGATCAGATGCGAACAATTGAGAACATCAATACACTAGTTTCTGAGTTAGCATTAGAGAAAGAAGAGTTGATACAATCTTTGGCATCTGAGACATCACATTGCTCCAAGTTGAAGGAACTGAATAATGATTTATCCCGGAAACTTGAAGCTCAAACTCAGAGATTAGAGCTTTTGACTGCCCAAAGTATGGCTAATGAGAGTGTTCCAATGAGGCAACCTATTTCGCATGATGTGCCTGACAGTACTCCATATGCAGATGAAGGGGATGAGGTGGTGGAAAGGGTCTTGGGATGGATTATGAAACTTTTTCCTGGAGGGCCATCCAGACGAAGAACTAGTAAGCTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0009507 GO:0009536 GO:0015934 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

788

Amino Acids

86.14

Weight (kDa)

5.12

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000450)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica	Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata	RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora	Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii	Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa	Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha	Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana	Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1455
AatII	GACGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	2 cut(s)	1531, 2203
AccI	GTMKAC	1 cut(s)	1926
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	34, 1511
AclI	AACGTT	2 cut(s)	1502, 1597
AclWI	GGATC	2 cut(s)	842, 1159
AcsI	RAATTY	2 cut(s)	545, 1432
AcuI	CTGAAG	4 cut(s)	165, 261, 1638, 1763
AcvI	CACGTG	1 cut(s)	1403
AcyI	GRCGYC	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	9 cut(s)	183, 211, 475, 640, 781, 832, 984, 1858, 2260
AfiI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
AhlI	ACTAGT	3 cut(s)	1010, 2050, 2351
AjnI	CCWGG	4 cut(s)	129, 1146, 1929, 2326
Alw21I	GWGCWC	3 cut(s)	922, 1390, 1777
Alw26I	GTCTC	6 cut(s)	145, 199, 397, 1442, 1999, 2099
Alw44I	GTGCAC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	842, 1159
Ama87I	CYCGRG	1 cut(s)	1391
AoxI	GGCC	7 cut(s)	221, 705, 733, 1262, 1521, 1542, 2333
ApaLI	GTGCAC	1 cut(s)	918
ApeKI	GCWGC	4 cut(s)	95, 913, 1331, 1586
ApoI	RAATTY	2 cut(s)	545, 1432
Asp718I	GGTACC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	9 cut(s)	221, 407, 497, 734, 1187, 1252, 1522, 1913, 2333
AsuC2I	CCSGG	2 cut(s)	1072, 2152
AsuHPI	GGTGA	3 cut(s)	281, 660, 857
AvaI	CYCGRG	1 cut(s)	1391
AvaII	GGWCC	5 cut(s)	407, 497, 1187, 1252, 1913
AxyI	CCTNAGG	2 cut(s)	1059, 1098
BaeGI	GKGCMC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	2070, 2102
BauI	CACGAG	1 cut(s)	1295
BbrPI	CACGTG	1 cut(s)	1403
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	3 cut(s)	922, 1390, 1777
BbvI	GCAGC	4 cut(s)	107, 925, 1343, 1598
BceAI	ACGGC	1 cut(s)	1529
BciT130I	CCWGG	4 cut(s)	131, 1148, 1931, 2328
BciVI	GTATCC	1 cut(s)	1957
BclI	TGATCA	1 cut(s)	2017
BcnI	CCSGG	2 cut(s)	1072, 2152
BcoDI	GTCTC	6 cut(s)	145, 199, 397, 1442, 1999, 2099
BcuI	ACTAGT	3 cut(s)	1010, 2050, 2351
BfmI	CTRYAG	4 cut(s)	171, 363, 834, 1887
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	620
BfuI	GTATCC	1 cut(s)	1957
BglII	AGATCT	2 cut(s)	1022, 1894
BisI	GCNGC	4 cut(s)	96, 914, 1332, 1587
BlpI	GCTNAGC	1 cut(s)	1092
BlsI	GCNGC	4 cut(s)	97, 915, 1333, 1588
BmcAI	AGTACT	2 cut(s)	1858, 2260
Bme1390I	CCNGG	6 cut(s)	131, 1072, 1148, 1931, 2152, 2328
Bme18I	GGWCC	5 cut(s)	407, 497, 1187, 1252, 1913
BmeT110I	CYCGRG	1 cut(s)	1391
BmgT120I	GGNCC	9 cut(s)	221, 407, 497, 734, 1187, 1252, 1522, 1913, 2333
BmiI	GGNNCC	4 cut(s)	409, 475, 499, 1915
BmrFI	CCNGG	6 cut(s)	131, 1072, 1148, 1931, 2152, 2328
BmsI	GCATC	2 cut(s)	2013, 2108
BoxI	GACNNNNGTC	1 cut(s)	1654
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	3 cut(s)	92, 1694, 2349
Bpu10I	CCTNAGC	2 cut(s)	12, 1811
Bpu1102I	GCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	2 cut(s)	786, 1559
BpuMI	CCSGG	2 cut(s)	1072, 2152
BsaAI	YACGTR	1 cut(s)	1403
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	1147
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	4 cut(s)	475, 708, 783, 942
Bse21I	CCTNAGG	2 cut(s)	1059, 1098
Bse3DI	GCAATG	1 cut(s)	2113
BseBI	CCWGG	4 cut(s)	131, 1148, 1931, 2328
BseDI	CCNNGG	1 cut(s)	1147
BseGI	GGATG	5 cut(s)	450, 511, 2287, 2312, 2336
BseLI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
BseMI	GCAATG	1 cut(s)	2113
BseNI	ACTGG	4 cut(s)	475, 708, 783, 942
BseRI	GAGGAG	4 cut(s)	89, 1115, 1649, 1919
BseSI	GKGCMC	1 cut(s)	922
BseXI	GCAGC	4 cut(s)	107, 925, 1343, 1598
BseYI	CCCAGC	1 cut(s)	1244
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	7 cut(s)	223, 707, 735, 1264, 1523, 1544, 2335
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	3 cut(s)	922, 1390, 1777
BsiHKCI	CYCGRG	1 cut(s)	1391
BsiSI	CCGG	3 cut(s)	67, 1071, 2152
BslFI	GGGAC	1 cut(s)	1899
BslI	CCNNNNNNNGG	7 cut(s)	73, 230, 298, 1244, 1531, 1973, 2203
BsmAI	GTCTC	6 cut(s)	145, 199, 397, 1442, 1999, 2099
BsmFI	GGGAC	1 cut(s)	1899
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	7 cut(s)	223, 707, 735, 1264, 1523, 1544, 2335
BsoBI	CYCGRG	1 cut(s)	1391
Bsp1286I	GDGCHC	3 cut(s)	922, 1390, 1777
Bsp1407I	TGTACA	1 cut(s)	982
Bsp143I	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
Bsp1720I	GCTNAGC	1 cut(s)	1092
BspACI	CCGC	2 cut(s)	34, 1511
BspANI	GGCC	7 cut(s)	223, 707, 735, 1264, 1523, 1544, 2335
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	4 cut(s)	409, 475, 499, 1915
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	842, 1159
BspQI	GCTCTTC	1 cut(s)	1782
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	2113
BsrFI	RCCGGY	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	982
BsrI	ACTGG	4 cut(s)	475, 708, 783, 942
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	1147
BssMI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	1295
Bst2BI	CACGAG	1 cut(s)	1295
Bst2UI	CCWGG	4 cut(s)	131, 1148, 1931, 2328
Bst4CI	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
Bst6I	CTCTTC	4 cut(s)	1714, 1779, 1782, 2073
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	2 cut(s)	1807, 2248
BstAUI	TGTACA	1 cut(s)	982
BstBAI	YACGTR	1 cut(s)	1403
BstC8I	GCNNGC	4 cut(s)	68, 821, 911, 918
BstF5I	GGATG	5 cut(s)	450, 511, 2287, 2312, 2336
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	7 cut(s)	370, 850, 1025, 1154, 1518, 1897, 2020
BstMAI	GTCTC	6 cut(s)	145, 199, 397, 1442, 1999, 2099
BstMBI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
BstNI	CCWGG	4 cut(s)	131, 1148, 1931, 2328
BstNSI	RCATGY	2 cut(s)	308, 823
BstPAI	GACNNNNGTC	1 cut(s)	1654
BstSCI	CCNGG	6 cut(s)	129, 1070, 1146, 1929, 2150, 2326
BstSFI	CTRYAG	4 cut(s)	171, 363, 834, 1887
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	4 cut(s)	107, 925, 1343, 1598
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	1022, 1894
BstXI	CCANNNNNNTGG	1 cut(s)	1609
BstYI	RGATCY	2 cut(s)	1022, 1894
Bsu36I	CCTNAGG	2 cut(s)	1059, 1098
BsuI	GTATCC	1 cut(s)	1957
BsuRI	GGCC	7 cut(s)	223, 707, 735, 1264, 1523, 1544, 2335
BtsCI	GGATG	5 cut(s)	450, 511, 2287, 2312, 2336
BtsI	GCAGTG	1 cut(s)	1154
BtsIMutI	CAGTG	5 cut(s)	237, 790, 949, 1154, 1777
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	4 cut(s)	68, 821, 911, 918
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	9 cut(s)	221, 407, 497, 734, 1187, 1252, 1522, 1913, 2333
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
CviAII	CATG	7 cut(s)	305, 820, 980, 1138, 1960, 1973, 2243
CviQI	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
DpnI	GATC	7 cut(s)	369, 849, 1024, 1153, 1517, 1896, 2019
DpnII	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
DraIII	CACNNNGTG	1 cut(s)	701
Eam1104I	CTCTTC	4 cut(s)	1714, 1779, 1782, 2073
EarI	CTCTTC	4 cut(s)	1714, 1779, 1782, 2073
Eco47I	GGWCC	5 cut(s)	407, 497, 1187, 1252, 1913
Eco57I	CTGAAG	4 cut(s)	165, 261, 1638, 1763
Eco72I	CACGTG	1 cut(s)	1403
Eco81I	CCTNAGG	2 cut(s)	1059, 1098
Eco88I	CYCGRG	1 cut(s)	1391
EcoRII	CCWGG	4 cut(s)	129, 1146, 1929, 2326
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	7 cut(s)	308, 823, 983, 1141, 1963, 1976, 2246
FalI	AAGNNNNNCTT	2 cut(s)	1804, 1836
FaqI	GGGAC	1 cut(s)	1899
FatI	CATG	7 cut(s)	304, 819, 979, 1137, 1959, 1972, 2242
FauNDI	CATATG	2 cut(s)	493, 2266
FbaI	TGATCA	1 cut(s)	2017
FblI	GTMKAC	1 cut(s)	1926
Fnu4HI	GCNGC	4 cut(s)	96, 914, 1332, 1587
FokI	GGATG	5 cut(s)	457, 498, 2294, 2319, 2323
Fsp4HI	GCNGC	4 cut(s)	96, 914, 1332, 1587
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	96, 914, 1332, 1587
GsaI	CCCAGC	1 cut(s)	1248
GsuI	CTGGAG	3 cut(s)	92, 1694, 2349
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	7 cut(s)	223, 707, 735, 1264, 1523, 1544, 2335
HapII	CCGG	3 cut(s)	67, 1071, 2152
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	7 cut(s)	308, 823, 983, 1141, 1963, 1976, 2246
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	1477, 1764
HindII	GTYRAC	2 cut(s)	1477, 1764
HindIII	AAGCTT	3 cut(s)	243, 1818, 2357
HpaII	CCGG	3 cut(s)	67, 1071, 2152
HphI	GGTGA	3 cut(s)	281, 660, 857
Hpy166II	GTNNAC	8 cut(s)	530, 920, 1252, 1285, 1477, 1764, 1881, 1927
Hpy8I	GTNNAC	8 cut(s)	530, 920, 1252, 1285, 1477, 1764, 1881, 1927
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	866, 1633, 2122, 2270
HpyCH4III	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
HpyCH4IV	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
HpySE526I	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	7 cut(s)	308, 823, 983, 1141, 1963, 1976, 2246
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	2017
Kzo9I	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
LguI	GCTCTTC	1 cut(s)	1782
LmnI	GCTCC	3 cut(s)	203, 1968, 2123
Lsp1109I	GCAGC	4 cut(s)	107, 925, 1343, 1598
LweI	GCATC	2 cut(s)	2013, 2108
MaeII	ACGT	5 cut(s)	116, 526, 1402, 1502, 1597
MaeIII	GTNAC	5 cut(s)	187, 269, 853, 997, 1503
MalI	GATC	7 cut(s)	369, 849, 1024, 1153, 1517, 1896, 2019
MboI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
MfeI	CAATTG	2 cut(s)	1682, 2031
MflI	RGATCY	2 cut(s)	1022, 1894
MhlI	GDGCHC	3 cut(s)	922, 1390, 1777
MluCI	AATT	6 cut(s)	25, 545, 712, 1432, 1682, 2031
MlyI	GAGTC	4 cut(s)	1001, 1084, 1112, 1424
MmeI	TCCRAC	1 cut(s)	1140
Mph1103I	ATGCAT	1 cut(s)	358
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	1 cut(s)	1050
MspI	CCGG	3 cut(s)	67, 1071, 2152
MspR9I	CCNGG	6 cut(s)	131, 1072, 1148, 1931, 2152, 2328
MunI	CAATTG	2 cut(s)	1682, 2031
Mva1269I	GAATGC	1 cut(s)	1213
MvaI	CCWGG	4 cut(s)	131, 1148, 1931, 2328
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	9 cut(s)	104, 561, 570, 910, 1394, 1403, 1678, 1807, 2248
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	2 cut(s)	1072, 2152
NdeI	CATATG	2 cut(s)	493, 2266
NdeII	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	7 cut(s)	308, 823, 983, 1141, 1963, 1976, 2246
NlaIV	GGNNCC	4 cut(s)	409, 475, 499, 1915
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	308, 823
PaeI	GCATGC	1 cut(s)	823
PaeR7I	CTCGAG	1 cut(s)	1391
PciSI	GCTCTTC	1 cut(s)	1782
PctI	GAATGC	1 cut(s)	1213
PdiI	GCCGGC	1 cut(s)	68
PfeI	GAWTC	6 cut(s)	347, 583, 617, 769, 938, 1043
PflMI	CCANNNNNTGG	2 cut(s)	1531, 2203
PfoI	TCCNGGA	3 cut(s)	1070, 2150, 2326
PkrI	GCNGC	4 cut(s)	97, 915, 1333, 1588
PleI	GAGTC	4 cut(s)	1000, 1083, 1111, 1423
PmaCI	CACGTG	1 cut(s)	1403
PmlI	CACGTG	1 cut(s)	1403
PpsI	GAGTC	4 cut(s)	1000, 1083, 1111, 1423
Ppu21I	YACGTR	1 cut(s)	1403
PshAI	GACNNNNGTC	1 cut(s)	1654
PsiI	TTATAA	1 cut(s)	1455
Psp1406I	AACGTT	2 cut(s)	1502, 1597
Psp6I	CCWGG	4 cut(s)	129, 1146, 1929, 2326
PspCI	CACGTG	1 cut(s)	1403
PspFI	CCCAGC	1 cut(s)	1244
PspGI	CCWGG	4 cut(s)	129, 1146, 1929, 2326
PspN4I	GGNNCC	4 cut(s)	409, 475, 499, 1915
PspPI	GGNCC	9 cut(s)	221, 407, 497, 734, 1187, 1252, 1522, 1913, 2333
PspXI	VCTCGAGB	1 cut(s)	1391
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	1022, 1894
RsaI	GTAC	9 cut(s)	183, 211, 475, 640, 781, 832, 984, 1858, 2260
RsaNI	GTAC	9 cut(s)	182, 210, 474, 639, 780, 831, 983, 1857, 2259
SapI	GCTCTTC	1 cut(s)	1782
SaqAI	TTAA	1 cut(s)	1050
SatI	GCNGC	4 cut(s)	96, 914, 1332, 1587
Sau3AI	GATC	7 cut(s)	367, 847, 1022, 1151, 1515, 1894, 2017
Sau96I	GGNCC	9 cut(s)	221, 407, 497, 734, 1187, 1252, 1522, 1913, 2333
ScaI	AGTACT	2 cut(s)	1858, 2260
SchI	GAGTC	4 cut(s)	1001, 1084, 1112, 1424
ScrFI	CCNGG	6 cut(s)	131, 1072, 1148, 1931, 2152, 2328
SduI	GDGCHC	3 cut(s)	922, 1390, 1777
SfaNI	GCATC	2 cut(s)	2013, 2108
SfcI	CTRYAG	4 cut(s)	171, 363, 834, 1887
Sfr274I	CTCGAG	1 cut(s)	1391
SinI	GGWCC	5 cut(s)	407, 497, 1187, 1252, 1913
SlaI	CTCGAG	1 cut(s)	1391
SmlI	CTYRAG	3 cut(s)	801, 1391, 1538
SmoI	CTYRAG	3 cut(s)	801, 1391, 1538
SpeI	ACTAGT	3 cut(s)	1010, 2050, 2351
SphI	GCATGC	1 cut(s)	823
Sse9I	AATT	6 cut(s)	25, 545, 712, 1432, 1682, 2031
SsiI	CCGC	2 cut(s)	34, 1511
StyD4I	CCNGG	6 cut(s)	129, 1070, 1146, 1929, 2150, 2326
TaaI	ACNGT	9 cut(s)	181, 193, 269, 329, 1121, 1748, 1924, 1980, 2258
TaiI	ACGT	5 cut(s)	119, 529, 1405, 1505, 1600
TaqI	TCGA	4 cut(s)	29, 260, 611, 1392
TasI	AATT	6 cut(s)	25, 545, 712, 1432, 1682, 2031
TatI	WGTACW	3 cut(s)	982, 1856, 2258
TfiI	GAWTC	6 cut(s)	347, 583, 617, 769, 938, 1043
Tru1I	TTAA	1 cut(s)	1050
Tru9I	TTAA	1 cut(s)	1050
TscAI	CASTG	5 cut(s)	244, 790, 949, 1161, 1777
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	4 cut(s)	95, 913, 1331, 1586
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	2 cut(s)	71, 610
TspRI	CASTG	5 cut(s)	244, 790, 949, 1161, 1777
Van91I	CCANNNNNTGG	2 cut(s)	1531, 2203
VneI	GTGCAC	1 cut(s)	918
VpaK11BI	GGWCC	5 cut(s)	407, 497, 1187, 1252, 1913
XapI	RAATTY	2 cut(s)	545, 1432
XbaI	TCTAGA	2 cut(s)	1573, 1897
XceI	RCATGY	2 cut(s)	308, 823
XhoI	CTCGAG	1 cut(s)	1391
XmiI	GTMKAC	1 cut(s)	1926
ZraI	GACGTC	1 cut(s)	117
ZrmI	AGTACT	2 cut(s)	1858, 2260
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.