Rmu_sc0003623.1_g000007

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003623.1
OG0000450
Physical Location & Seq
Forward (+)
27052 .. 27456
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003623.1_g000007.1.cds

Sequence Viewer

Length: 405 bp
atggtgaaaggagagaaccaaattgagggcgaagtgccttggtatggaacaataaaagacattattgagttgcggtatacaaagaggaatagggttgtcttgttcaattgtaattggtatgacacggccacagagcggactggttataaggtggatcggaatgggatagtaagtgttaatacacgagccaagctaaatactgatgaaccatttgtgctagttgaccatgcaactcaagtttattacattcaggaaataaaaaatagtgcatggagtgttgtggtggaaacaaaacctagaaacatttttgagatgcctgcaaatgaaggtgaaccatctcaagaagaagaagctcagcatggttacacacatgataatcaaaatgaggacgaagatttggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

134

Amino Acids

15.61

Weight (kDa)

4.7

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 77
AciI CCGC 2 cut(s) 73, 136
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 25, 44, 135
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 193, 353
AluI AGCT 2 cut(s) 193, 353
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 16, 341
BauI CACGAG 1 cut(s) 183
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 141
BfaI CTAG 2 cut(s) 218, 297
BlpI GCTNAGC 1 cut(s) 354
BmsI GCATC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 219, 324
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 44, 135
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 3 cut(s) 25, 44, 135
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 145
BshFI GGCC 1 cut(s) 128
BslI CCNNNNNNNGG 3 cut(s) 25, 44, 135
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 2 cut(s) 73, 136
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 367
BspPI GGATC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 154
BssNAI GTATAC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 38
Bst1107I GTATAC 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 354
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstZ17I GTATAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 318
CviAII CATG 4 cut(s) 227, 270, 359, 371
CviJI RGCY 4 cut(s) 128, 188, 193, 353
CviKI_1 RGCY 4 cut(s) 128, 188, 193, 353
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 4 cut(s) 230, 273, 362, 374
FaiI YATR 8 cut(s) 45, 78, 120, 147, 228, 271, 360, 372
FatI CATG 4 cut(s) 226, 269, 358, 370
FblI GTMKAC 1 cut(s) 77
FspBI CTAG 2 cut(s) 218, 297
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 4 cut(s) 230, 273, 362, 374
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HphI GGTGA 2 cut(s) 16, 341
Hpy166II GTNNAC 3 cut(s) 78, 223, 332
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 251, 341
Hpy8I GTNNAC 3 cut(s) 78, 223, 332
HpyAV CCTTC 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 230, 269, 320
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 4 cut(s) 230, 273, 362, 374
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 126, 236, 330
LweI GCATC 1 cut(s) 303
MaeI CTAG 2 cut(s) 218, 297
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 156
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 356, 359, 404
MfeI CAATTG 1 cut(s) 106
MluCI AATT 3 cut(s) 21, 106, 112
MnlI CCTC 3 cut(s) 19, 78, 379
MseI TTAA 1 cut(s) 177
MunI CAATTG 1 cut(s) 106
NdeII GATC 1 cut(s) 154
NlaIII CATG 4 cut(s) 230, 273, 362, 374
PsiI TTATAA 1 cut(s) 147
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 154
SetI ASST 5 cut(s) 153, 195, 298, 331, 355
SfaNI GCATC 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 234, 339
SmoI CTYRAG 2 cut(s) 234, 339
Sse9I AATT 3 cut(s) 21, 106, 112
SsiI CCGC 2 cut(s) 73, 136
SspMI CTAG 2 cut(s) 218, 297
StyI CCWWGG 1 cut(s) 38
TasI AATT 3 cut(s) 21, 106, 112
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 219, 339
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 2 cut(s) 218, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.