Rh5CG305800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000450
Physical Location & Seq
Forward (+)
33698092 .. 33710634
12543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG305800.1

Sequence Viewer

Length: 279 bp
ATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCAAGTCTTCCACACGTTCACAGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTGGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCCTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGATCTCTAATTTCGACTCGAGACGCCTCACGCGCCTCGGCTCCGGCAGCTCCCTTCCTCACCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.86

Weight (kDa)

9.69

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 62
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 32, 257
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 116, 262
AvaI CYCGRG 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 48, 84
BbvI GCAGC 2 cut(s) 44, 269
BceAI ACGGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 277
BglII AGATCT 1 cut(s) 212
BisI GCNGC 2 cut(s) 33, 258
BlsI GCNGC 2 cut(s) 34, 259
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 48, 84
BpuEI CTTGAG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 44, 269
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 1 cut(s) 212
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 212
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 242, 257
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 44, 269
BstV2I GAAGAC 2 cut(s) 48, 84
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 242
CviAII CATG 2 cut(s) 101, 187
CviJI RGCY 6 cut(s) 124, 137, 159, 180, 251, 260
CviKI_1 RGCY 6 cut(s) 124, 137, 159, 180, 251, 260
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 2 cut(s) 104, 190
FaiI YATR 3 cut(s) 102, 188, 204
FatI CATG 2 cut(s) 100, 186
Fnu4HI GCNGC 2 cut(s) 33, 258
Fsp4HI GCNGC 2 cut(s) 33, 258
FspBI CTAG 1 cut(s) 277
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 33, 258
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 104, 190
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 92, 226
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 116, 262
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 113, 274
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 257
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 104, 190
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 256, 265
LpnPI CCDG 3 cut(s) 110, 174, 267
Lsp1109I GCAGC 2 cut(s) 44, 269
MaeI CTAG 1 cut(s) 277
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 3 cut(s) 48, 89, 122
MflI RGATCY 1 cut(s) 212
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 7 cut(s) 106, 127, 138, 149, 247, 256, 278
MroXI GAANNNNTTC 1 cut(s) 81
MspI CCGG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 196
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 242, 257
NdeII GATC 1 cut(s) 212
NlaIII CATG 2 cut(s) 104, 190
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 228
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 34, 259
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 212
SatI GCNGC 2 cut(s) 33, 258
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 220
SetI ASST 4 cut(s) 67, 117, 154, 262
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 50, 228
SmoI CTYRAG 2 cut(s) 50, 228
Sse9I AATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 224, 229
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 32, 257
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 105, 203
XagI CCTNNNNNAGG 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.