Rh2BG038900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000450
Physical Location & Seq
Forward (+)
2703109 .. 2705041
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG038900.1

Sequence Viewer

Length: 732 bp
ATGGTAGATTATGACTTTGAGAAGAATGAGACAGAAGCTAATAGGAGGGGGAAGCTAGCAAAGAACTTCAGTTCAGTTGGTTCACTAGAAGAGCTGGTAGGTAATAGAAACATCGGAGCAGGACATTTAAAATCAGAAATTAATTCACGAATTAAGGAAGAATACATCCACAAGTTTTCAGAACGAGTGAGATTCATCATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCAAGTCTTCCACACGTTCACAGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTGGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCCTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAAGTCAGAGTTGCAAGGCCCATTCATAACATGGGCACAATATCCGCAAGATCAATTGGATAAGTTGTTTGACCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATAGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACACTCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

28.1

Weight (kDa)

9.05

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AciI CCGC 2 cut(s) 497, 646
AcsI RAATTY 3 cut(s) 541, 548, 627
AcuI CTGAAG 2 cut(s) 52, 294
AdeI CACNNNGTG 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 454, 547, 697
AluBI AGCT 5 cut(s) 38, 55, 94, 428, 668
AluI AGCT 5 cut(s) 38, 55, 94, 428, 668
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 3 cut(s) 355, 443, 469
ApeKI GCWGC 3 cut(s) 230, 662, 665
ApoI RAATTY 3 cut(s) 541, 548, 627
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 356, 444, 470
AsuHPI GGTGA 1 cut(s) 314
AsuNHI GCTAGC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 246, 282
BbvI GCAGC 3 cut(s) 242, 649, 677
BceAI ACGGC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 56, 86
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 3 cut(s) 231, 663, 666
BlsI GCNGC 3 cut(s) 232, 664, 667
BmgT120I GGNCC 3 cut(s) 356, 444, 470
BmiI GGNNCC 1 cut(s) 446
BmtI GCTAGC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 246, 282
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 561
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 2 cut(s) 165, 624
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 620
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 3 cut(s) 242, 649, 677
BshFI GGCC 3 cut(s) 357, 445, 471
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 357, 445, 471
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 2 cut(s) 497, 646
BspANI GGCC 3 cut(s) 357, 445, 471
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 3 cut(s) 84, 303, 455
BstC8I GCNNGC 2 cut(s) 57, 235
BstDEI CTNAG 1 cut(s) 330
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 165, 624
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 242, 649, 677
BstV2I GAAGAC 2 cut(s) 246, 282
BstXI CCANNNNNNTGG 1 cut(s) 708
BsuRI GGCC 3 cut(s) 357, 445, 471
BtsCI GGATG 2 cut(s) 165, 624
Cac8I GCNNGC 2 cut(s) 57, 235
CciI TCATGA 1 cut(s) 198
Cfr13I GGNCC 3 cut(s) 356, 444, 470
CviAII CATG 4 cut(s) 199, 299, 385, 483
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DraI TTTAAA 1 cut(s) 129
DraIII CACNNNGTG 1 cut(s) 302
Eam1104I CTCTTC 3 cut(s) 84, 303, 455
EarI CTCTTC 3 cut(s) 84, 303, 455
Eco57I CTGAAG 2 cut(s) 52, 294
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 356
FaeI CATG 4 cut(s) 202, 302, 388, 486
FatI CATG 4 cut(s) 198, 298, 384, 482
Fnu4HI GCNGC 3 cut(s) 231, 663, 666
FokI GGATG 2 cut(s) 152, 631
Fsp4HI GCNGC 3 cut(s) 231, 663, 666
FspBI CTAG 2 cut(s) 56, 86
GluI GCNGC 3 cut(s) 231, 663, 666
HaeIII GGCC 3 cut(s) 357, 445, 471
Hin1II CATG 4 cut(s) 202, 302, 388, 486
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 3 cut(s) 192, 290, 601
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 83, 266
Hpy188I TCNGA 7 cut(s) 116, 136, 181, 274, 460, 562, 633
Hpy188III TCNNGA 3 cut(s) 147, 199, 598
Hpy8I GTNNAC 2 cut(s) 83, 266
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 392, 466, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 4 cut(s) 202, 302, 388, 486
Kzo9I GATC 1 cut(s) 502
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 116, 563
LpnPI CCDG 6 cut(s) 80, 105, 308, 372, 601, 714
Lsp1109I GCAGC 3 cut(s) 242, 649, 677
MaeI CTAG 2 cut(s) 56, 86
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 302, 611
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 9 cut(s) 34, 101, 170, 246, 287, 320, 442, 544, 578
MfeI CAATTG 1 cut(s) 506
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 7 cut(s) 138, 142, 150, 506, 541, 548, 627
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 8 cut(s) 39, 304, 325, 336, 347, 402, 458, 556
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 3 cut(s) 128, 141, 153
MunI CAATTG 1 cut(s) 506
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeII GATC 1 cut(s) 502
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 202, 302, 388, 486
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 2 cut(s) 302, 611
PagI TCATGA 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 192, 290
PkrI GCNGC 3 cut(s) 232, 664, 667
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PshBI ATTAAT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 3 cut(s) 356, 444, 470
PstI CTGCAG 1 cut(s) 667
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 128, 141, 153
SatI GCNGC 3 cut(s) 231, 663, 666
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 3 cut(s) 356, 444, 470
SchI GAGTC 1 cut(s) 595
SduI GDGCHC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 7 cut(s) 138, 142, 150, 506, 541, 548, 627
SsiI CCGC 2 cut(s) 497, 646
SspMI CTAG 2 cut(s) 56, 86
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 670
TasI AATT 7 cut(s) 138, 142, 150, 506, 541, 548, 627
TfiI GAWTC 2 cut(s) 192, 290
Tru1I TTAA 3 cut(s) 128, 141, 153
Tru9I TTAA 3 cut(s) 128, 141, 153
TseFI GTSAC 2 cut(s) 302, 611
TseI GCWGC 3 cut(s) 230, 662, 665
Tsp45I GTSAC 2 cut(s) 302, 611
TspDTI ATGAA 4 cut(s) 184, 303, 401, 466
TspGWI ACGGA 2 cut(s) 602, 675
VspI ATTAAT 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 3 cut(s) 541, 548, 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 56, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.