Rroxscaffold_7G00208250

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000450
Physical Location & Seq
Reverse (-)
58247124 .. 58247528
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208250.1

Sequence Viewer

Length: 405 bp
ATGGTCAAAGGAGAGAACCAAATTAATTGTGTGCCTTGGTATGGAACCCTTACGGACGTCGTTGAGCTCTTGTATACAGATCACAATAAAGTTGTCTTGTTTCACTGTAATTGGTTTGACACAGCTACCAAAGGCAAAGGTTATAAGGAAGATCGTTATGGCATACTAAGTGTCAACAATAAGGGTAAGTTGAATACCCAAGAGCCATTTGTGCTGGCATCCCAAGCAACCCAAGTTTATTATGTTGAAGGAATAAAAAACAGTGCTTGGAGTGTTGTGGTGGAAACCAAACCCAGAAATGTTTTTGAAATGCCTACCGATGAAGAGGAACCGTATCAAGAAGAAGAATCGCAGACGAGTCACACATATGCAAACCGTAACGAGGAAGAAGATAATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

134

Amino Acids

15.52

Weight (kDa)

4.62

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 22 - 93 7.1e-26 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AatII GACGTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 41, 382
AgsI TTSAA 3 cut(s) 193, 248, 308
AluBI AGCT 2 cut(s) 67, 125
AluI AGCT 2 cut(s) 67, 125
Alw21I GWGCWC 1 cut(s) 69
AseI ATTAAT 1 cut(s) 24
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 46, 330
BmsI GCATC 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 382
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 41, 382
BsiHKAI GWGCWC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 41, 382
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 79, 151
BspLI GGNNCC 2 cut(s) 46, 330
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 79, 151
BssNAI GTATAC 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 35
Bst1107I GTATAC 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 107, 263, 333, 377
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 218
BstKTI GATC 2 cut(s) 82, 154
BstMBI GATC 2 cut(s) 79, 151
BstMWI GCNNNNNNNGC 2 cut(s) 211, 224
BstZ17I GTATAC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 103, 268
Cac8I GCNNGC 1 cut(s) 216
CviJI RGCY 3 cut(s) 67, 125, 205
CviKI_1 RGCY 3 cut(s) 67, 125, 205
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 81, 153
DpnII GATC 2 cut(s) 79, 151
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 8 cut(s) 42, 75, 144, 159, 164, 243, 367, 369
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 74
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 347, 358
Hpy166II GTNNAC 2 cut(s) 75, 175
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 75, 175
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 4 cut(s) 107, 263, 333, 377
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 224
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 79, 151
LpnPI CCDG 2 cut(s) 200, 307
LweI GCATC 1 cut(s) 227
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 359, 377
MalI GATC 2 cut(s) 81, 153
MboI GATC 2 cut(s) 79, 151
MboII GAAGA 6 cut(s) 161, 335, 353, 356, 398, 401
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 21, 25, 109
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 2 cut(s) 319, 376
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 211, 224
NdeI CATATG 1 cut(s) 367
NdeII GATC 2 cut(s) 79, 151
NlaIV GGNNCC 2 cut(s) 46, 330
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 347
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 46, 330
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 79, 151
SchI GAGTC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 69
SetI ASST 4 cut(s) 60, 69, 127, 142
SfaNI GCATC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 3 cut(s) 21, 25, 109
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 4 cut(s) 107, 263, 333, 377
TaiI ACGT 1 cut(s) 60
TasI AATT 3 cut(s) 21, 25, 109
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 2 cut(s) 110, 268
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 110, 268
VspI ATTAAT 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 74
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.