Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001200.1

Orthogroup ID

OG0000450

Physical Location & Seq

Genomic Coordinates Reverse (-)

61918 .. 64488

Gene Structure 2571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001200.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcagggagattgagcaaggcggcgtccgaaatcatggccagaaatggcgtcatccaccgttccgtcacctcctctctccgactccacgctgtcatgagcttccccgtcggcaaaccctcaatccccgacatacccctccccgtcaacgacgagctcgctcgccgtttaccgaatcctgtatctatcgcatcgccgacactctgggatacagttatggcaaagcaaagactcaaaagggcatcaagcttctcacgtcctgagtcatctggtctcccttcaaaccaaaaccctcacaacgggtcatcgactcacaacgaaacacaagacatggaagagataggttctgaagctccactatcagaagaacaagtgtctggtcattctccaaaaaaaggtagagggaaagccaaatgtgaaaaaggttatggaatggattccgaaatctttcgaaaaagaattcgtggcttaggtgatggcatgataccacctgaagatgaagatgtggactcttctagccacacttgcaataagcgtccatgcatggagcgtgagaaagaattcgaacaagtgaatgagaaagttacaaccctaaccaaccagctagaagatttgaagcaagtggttatgactttgctatcgaagaactcaactcattctgaatgcgcaacagaagcaccatctactgtaactttcttttcatatgcactccaaattctaacctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.59

Weight (kDa)

6.67

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica	Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata	RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora	Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii	Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa	Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha	Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana	Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	667
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	459, 560, 714
AcuI	CTGAAG	2 cut(s)	369, 513
AcyI	GRCGYC	2 cut(s)	26, 51
AfiI	CCNNNNNNNGG	2 cut(s)	299, 395
AgsI	TTSAA	2 cut(s)	282, 616
AjiI	CACGTC	1 cut(s)	257
AluBI	AGCT	5 cut(s)	102, 157, 249, 353, 604
AluI	AGCT	5 cut(s)	102, 157, 249, 353, 604
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	3 cut(s)	459, 560, 714
Asp700I	GAANNNNTTC	3 cut(s)	436, 447, 560
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	61, 485
AsuII	TTCGAA	2 cut(s)	451, 564
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	2 cut(s)	470, 688
BceAI	ACGGC	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	516, 605
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	200, 251
Bpu10I	CCTNAGC	1 cut(s)	469
Bpu14I	TTCGAA	2 cut(s)	451, 564
BsaHI	GRCGYC	2 cut(s)	26, 51
BsaI	GGTCTC	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 395
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	299, 395
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	299, 395
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	2 cut(s)	451, 564
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	96
BspT104I	TTCGAA	2 cut(s)	451, 564
BspTNI	GGTCTC	1 cut(s)	278
BssNI	GRCGYC	2 cut(s)	26, 51
Bst4CI	ACNGT	3 cut(s)	62, 214, 688
Bst6I	CTCTTC	2 cut(s)	330, 517
BstACI	GRCGYC	2 cut(s)	26, 51
BstBI	TTCGAA	2 cut(s)	451, 564
BstC8I	GCNNGC	2 cut(s)	159, 163
BstDEI	CTNAG	3 cut(s)	261, 469, 726
BstF5I	GGATG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	668
BstMAI	GTCTC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 674
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	159, 163
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	668
CseI	GACGC	3 cut(s)	15, 40, 524
CviAII	CATG	6 cut(s)	37, 97, 331, 481, 540, 544
CviJI	RGCY	9 cut(s)	41, 102, 157, 249, 353, 410, 468, 519, 604
CviKI_1	RGCY	9 cut(s)	41, 102, 157, 249, 353, 410, 468, 519, 604
DdeI	CTNAG	3 cut(s)	261, 469, 726
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	330, 517
EarI	CTCTTC	2 cut(s)	330, 517
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	369, 513
EcoICRI	GAGCTC	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	459, 560
EcoT22I	ATGCAT	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	6 cut(s)	40, 100, 334, 484, 543, 547
FatI	CATG	6 cut(s)	36, 96, 330, 480, 539, 543
FauNDI	CATATG	1 cut(s)	703
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	516, 605
FspI	TGCGCA	1 cut(s)	667
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	41
HgaI	GACGC	3 cut(s)	15, 40, 524
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	2 cut(s)	26, 51
Hin1II	CATG	6 cut(s)	40, 100, 334, 484, 543, 547
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	7 cut(s)	84, 175, 231, 263, 310, 437, 509
HphI	GGTGA	2 cut(s)	61, 485
Hpy166II	GTNNAC	3 cut(s)	148, 170, 508
Hpy188I	TCNGA	6 cut(s)	31, 83, 349, 364, 442, 661
Hpy188III	TCNNGA	2 cut(s)	97, 260
Hpy8I	GTNNAC	3 cut(s)	148, 170, 508
Hpy99I	CGWCG	2 cut(s)	113, 155
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	3 cut(s)	62, 214, 688
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	528, 543, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 674
HpyF3I	CTNAG	3 cut(s)	261, 469, 726
HpySE526I	ACGT	1 cut(s)	256
Hsp92I	GRCGYC	2 cut(s)	26, 51
Hsp92II	CATG	6 cut(s)	40, 100, 334, 484, 543, 547
HspAI	GCGC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	358, 547
LpnPI	CCDG	8 cut(s)	55, 190, 192, 255, 273, 363, 504, 614
LweI	GCATC	2 cut(s)	200, 251
MaeI	CTAG	2 cut(s)	516, 605
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	3 cut(s)	67, 583, 688
MboII	GAAGA	7 cut(s)	347, 377, 504, 506, 512, 620, 655
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	3 cut(s)	459, 560, 714
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	5 cut(s)	78, 225, 272, 304, 503
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	6 cut(s)	82, 85, 130, 149, 303, 395
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	545
MroXI	GAANNNNTTC	3 cut(s)	436, 447, 560
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	525, 674
NdeI	CATATG	1 cut(s)	703
NlaIII	CATG	6 cut(s)	40, 100, 334, 484, 543, 547
NmuCI	GTSAC	1 cut(s)	67
NsbI	TGCGCA	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	545
NspV	TTCGAA	2 cut(s)	451, 564
PagI	TCATGA	1 cut(s)	96
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	3 cut(s)	436, 447, 560
PfeI	GAWTC	2 cut(s)	175, 437
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	5 cut(s)	78, 225, 271, 304, 503
PpsI	GAGTC	5 cut(s)	78, 225, 271, 304, 503
Psp124BI	GAGCTC	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	24
SchI	GAGTC	5 cut(s)	78, 225, 272, 304, 503
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	200, 251
SfuI	TTCGAA	2 cut(s)	451, 564
Sse9I	AATT	3 cut(s)	459, 560, 714
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	516, 605
SstI	GAGCTC	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	62, 214, 688
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	4 cut(s)	308, 451, 564, 641
TasI	AATT	3 cut(s)	459, 560, 714
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	175, 437
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	513, 690
TspGWI	ACGGA	1 cut(s)	55
XapI	RAATTY	3 cut(s)	459, 560, 714
XmnI	GAANNNNTTC	3 cut(s)	436, 447, 560
XspI	CTAG	2 cut(s)	516, 605
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.