Rh3BG359100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000450
Physical Location & Seq
Reverse (-)
43090792 .. 43096289
5498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG359100.1

Sequence Viewer

Length: 276 bp
ATGAGTGAAATCAGGAATAGTATTTTCCGCAAACACAAGACTGCTGCAGCTCAATATGCCAACAACCCATCATATTCGAAGCCGGAGATATGGACACCAATGGTTGATGAATGGCTAAAGGAAAAGTGGCAGGACAAGAGTGAGCGGAATGCGATTAATCGTGACAAATCAACTATGGTGCGTACAACGGGTTCAGTTTCGATGGCGAAATACATAAAAGAGGAGGATAAAACTTCAGGCTTCCGAGGGGCTTCATCTGCTCAGGTACATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

91

Amino Acids

10.47

Weight (kDa)

9.64

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 28 - 79 9.3e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 2 cut(s) 28, 145
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 2 cut(s) 184, 267
AflIII ACRYGT 1 cut(s) 268
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 44, 47
AseI ATTAAT 1 cut(s) 156
AsuII TTCGAA 1 cut(s) 77
BbvI GCAGC 2 cut(s) 31, 59
BccI CCATC 2 cut(s) 76, 196
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 45, 48
BlsI GCNGC 2 cut(s) 46, 49
Bpu10I CCTNAGC 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 31, 59
BsiSI CCGG 1 cut(s) 83
BsmI GAATGC 1 cut(s) 154
Bsp119I TTCGAA 1 cut(s) 77
BspACI CCGC 2 cut(s) 28, 145
BspCNI CTCAG 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 56, 257
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 31, 59
Csp6I GTAC 2 cut(s) 183, 266
CviAII CATG 1 cut(s) 269
CviJI RGCY 5 cut(s) 50, 82, 115, 240, 251
CviKI_1 RGCY 5 cut(s) 50, 82, 115, 240, 251
CviQI GTAC 2 cut(s) 183, 266
DdeI CTNAG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 219
FaeI CATG 1 cut(s) 272
FaiI YATR 6 cut(s) 57, 73, 91, 176, 215, 270
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 45, 48
Fsp4HI GCNGC 2 cut(s) 45, 48
GluI GCNGC 2 cut(s) 45, 48
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 272
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 13, 161
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 257
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 272
LpnPI CCDG 4 cut(s) 96, 116, 222, 248
Lsp1109I GCAGC 2 cut(s) 31, 59
MaeIII GTNAC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 145
MnlI CCTC 3 cut(s) 214, 217, 239
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 56, 257
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 272
NspV TTCGAA 1 cut(s) 77
PciI ACATGT 1 cut(s) 268
PctI GAATGC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 46, 49
PscI ACATGT 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 156
PsrI GAACNNNNNNTAC 2 cut(s) 175, 207
PstI CTGCAG 1 cut(s) 49
RsaI GTAC 2 cut(s) 184, 267
RsaNI GTAC 2 cut(s) 183, 266
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 45, 48
SetI ASST 2 cut(s) 52, 267
SfcI CTRYAG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 77
SgeI CNNG 9 cut(s) 25, 49, 95, 143, 148, 173, 201, 249, 257
SsiI CCGC 2 cut(s) 28, 145
TaqI TCGA 2 cut(s) 77, 200
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 44, 47
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 123, 243
VspI ATTAAT 1 cut(s) 156
XceI RCATGY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.