Rw5G007170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000450
Physical Location & Seq
Reverse (-)
7427654 .. 7430039
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007170.1

Sequence Viewer

Length: 171 bp
ATGGTTGATGAATGGCTGAAAGAAACGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGACAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGGCCATGGGAATGAATGGGACAGTGAGATGGTCCACAAGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.49

Weight (kDa)

6.55

Isoelectric Point (pI)

21.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 1 cut(s) 46
AfaI GTAC 1 cut(s) 113
AoxI GGCC 1 cut(s) 126
AseI ATTAAT 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 156
AvaII GGWCC 1 cut(s) 156
BccI CCATC 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 16, 128, 165
CviKI_1 RGCY 3 cut(s) 16, 128, 165
CviQI GTAC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 77, 84, 116, 131
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 53, 82
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 133
LpnPI CCDG 1 cut(s) 17
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 46
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 54
MnlI CCTC 2 cut(s) 115, 118
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 55
NcoI CCATGG 1 cut(s) 129
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 62
PctI GAATGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 57
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 156
SetI ASST 1 cut(s) 29
SgeI CNNG 5 cut(s) 39, 44, 74, 102, 142
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 46
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 29
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 111
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 24, 152
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 156
VspI ATTAAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.