FvH4_1g23272

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000450
Physical Location & Seq
Forward (+)
15142707 .. 15144070
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23272.t1

Sequence Viewer

Length: 258 bp
ATGGAACCACCTGAAGATGTGTGTGGTTCGAGTAGCAGCCAAACTTGCAATAAGCATTTGTGCTTAGAACGTGAAGAGGAGTTTGGACAAGTGAAACATAAAGTTGAAACTCTTACGGATGAGGTGGTAGATTTGAAACAACTCATTCAAGTTTTGCTTGCAAGAGAATCAGCCTCTTCGCTTGGTTCCTCAGACTCACTTACAACTGCTCCAATCTCAAAATCTGCTCATGGAGATTACGAAGCATGTGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.18

Weight (kDa)

4.63

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 33
AgsI TTSAA 3 cut(s) 107, 136, 149
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
Alw21I GWGCWC 1 cut(s) 253
Alw44I GTGCAC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 48
BcgI CGANNNNNNTGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 6, 187
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 6, 187
Bst6I CTCTTC 2 cut(s) 69, 181
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 64, 190
BstF5I GGATG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 159
CviAII CATG 2 cut(s) 230, 246
CviJI RGCY 2 cut(s) 39, 173
CviKI_1 RGCY 2 cut(s) 39, 173
DdeI CTNAG 2 cut(s) 64, 190
Eam1104I CTCTTC 2 cut(s) 69, 181
EarI CTCTTC 2 cut(s) 69, 181
Eco57I CTGAAG 1 cut(s) 33
FaeI CATG 2 cut(s) 233, 249
FaiI YATR 3 cut(s) 99, 231, 247
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 2 cut(s) 229, 245
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 233, 249
HinfI GANTC 2 cut(s) 167, 194
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 48, 161, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 2 cut(s) 64, 190
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 233, 249
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 48
MaeII ACGT 1 cut(s) 70
MboII GAAGA 3 cut(s) 26, 86, 168
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 4 cut(s) 70, 115, 184, 199
MwoI GCNNNNNNNGC 1 cut(s) 45
NlaIII CATG 2 cut(s) 233, 249
NlaIV GGNNCC 2 cut(s) 6, 187
NspI RCATGY 1 cut(s) 249
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 6, 187
SatI GCNGC 1 cut(s) 37
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 253
SetI ASST 3 cut(s) 13, 73, 126
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 29
TfiI GAWTC 1 cut(s) 167
TseI GCWGC 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 131
VneI GTGCAC 1 cut(s) 249
XceI RCATGY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.